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~~NOTOC~~


==Test Case Title==
====Genome assembly of heterozygous diploid data====
==Test Case Acronyme==
====HETERO====
==Test Case Class==
====Animals (Plants)====
==Contact person==
====Jacob Höglund, Biao Wang - EcolGen; Ignas Bunikis, Hossein Jorjani, Magnus Alm Rosenblad, Eva Hellmén - University of Uppsala ====
==Contact==
====nd====

==Test Case Description ==
Many NGS projects will not have access to data from inbred lines. This will cause problems in the assembly. How can this be solved?
==Background knowledge==
Current technology generate short reads, or low coverage. Extent and nature of DNA duplications is unknown. Which NGS approach is best?
==Initial state of the Test case==
nd
==Desired final state of the Test Case==
nd
==Test Case Work Plan==
nd
==Discussion==
LF: this is a research topic, especially for multiploid genomes. At the moment no solution exist. We could invite people how worked on similar projects or specialised in phasing.