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===== Test Cases =====


AllBio will work with Test Cases the partners will define with help of external groups. Test cases will come from livestock, microbiology and plant research and will describe complex bionformatics problems. AllBio will coordinate the solution of some Test Cases and present the solutions during dedicated events.

In July 2012 AllBio will publish a list of test cases and will search for collaboration to solve them.
In January 2013 during the "Open Bioinformatics Workshop: Evaluation of Test Cases" concrete approaches for there solution will be developed and interest groups will be formed to work them out.

Submit online a [[public:testcasetempl|Test Case]] describing your data analysis approach or download the {{:public:allbio_test_case_template.doc| Test Case Template}} and submit it to **andreas.gisel AT ba.itb.cnr DOT it** adding "Allbio Test Case" as subject.
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=====Selected Test Cases =====

  - **[[public:loadedtestcases:tc1|FAIRE-seq data analyser]]**
  - **[[public:loadedtestcases:tc2|Identification of large structural variations]]**
  - **[[public:loadedtestcases:tc3|Discovery of gene regulatory networks]]**
  - **[[public:loadedtestcases:tc4|Primer design for ChIP-PCR studies]]**
  - **[[public:loadedtestcases:tc5|Integrative Omics analysis workflow]]**
  - **[[public:loadedtestcases:tc6|Bacterial Comparative Genomics]]**
  - **[[public:loadedtestcases:tc7|Processing an un-annotated genome]]**
  - **[[public:loadedtestcases:tc8|Discover non-coding RNA in yeast]]**
  - **[[public:loadedtestcases:tc9|Pathway analysis of a poorly annotated but sequenced plant genome]]**
  - **[[public:loadedtestcases:tc10|Gene prediction modelling for plants]]**
  - **[[public:loadedtestcases:tc11|Genome assembly of heterozygous diploid data]]**
  - **[[public:loadedtestcases:tc12|Functional annotation of the potato genome]]**
  - **[[public:loadedtestcases:tc13|Transcriptome and small RNA comparison of four phenotypically distinct cv “Primitivo” grapevine clones]]**
  - **[[public:loadedtestcases:tc14|Improved cell factories]]**
  - **[[public:loadedtestcases:tc15|Genetics, Genomics and Evolution of prolific breeds of domestic
sheep (Ovis aries)]]**