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--- public:bioinf [2012/12/10 09:45] – andreas
+++ public:bioinf [2019/02/12 09:04] (current) – external edit 127.0.0.1
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-== Preliminary Programme ==
+== Programme ==
+([[public:bioinfo:update|see updates of the event]])
 **__12 December 2012__**
@@ Line 28: / Line 30: @@
   * 14:00 - 14:30  Welcome by the chair Erik Bongcom-Rudloff and the local organizer Andreas Gisel
   * 14:30 - 18:00  Presentation of the 15 selected test cases - each 10 plus some questions
-    - **[[public:loadedtestcases:tc1|FAIRE-seq data analyser]]** - Amin Omidbakhshfard
+    - **[[public:loadedtestcases:tc1|FAIRE-seq data analyser]]** - Amin Omidbakhshfard (University of Potsdam, Germany)
     - **[[public:loadedtestcases:tc2|Identification of large structural variations]]** - TBD
-    - **[[public:loadedtestcases:tc3|Discovery of gene regulatory networks]]** - Nooshin Omranian
+    - **[[public:loadedtestcases:tc3|Discovery of gene regulatory networks]]** - Nooshin Omranian (Max Planck Institute of Molecular Plant Physiology, Potsdam, Germany)
-    - **[[public:loadedtestcases:tc4|Primer design for ChIP-PCR studies]]** - Prashant Garapati
+    - **[[public:loadedtestcases:tc4|Primer design for ChIP-PCR studies]]** - Prashant Garapati (Max Planck Institute of Molecular Plant Physiology, Potsdam, Germany)
-    - **[[public:loadedtestcases:tc5|Integrative Omics analysis workflow]]** Karl Göran Andersson
+    - **[[public:loadedtestcases:tc5|Integrative Omics analysis workflow]]** Karl Göran Andersson (Swedish University for Agricultural Sciences, Uppsala, Sweden)
-    - **[[public:loadedtestcases:tc6|Bacterial Comparative Genomics]]** - Laurent Falquet
+    - **[[public:loadedtestcases:tc6|Bacterial Comparative Genomics]]** - Laurent Falquet Swiss Institute of Bioinformatics, Lausanne, Switzerland)
     - **[[public:loadedtestcases:tc7|Processing an un-annotated genome]]** - TBD
     - **[[public:loadedtestcases:tc8|Discover non-coding RNA in yeast]]** - TBD
-    - **[[public:loadedtestcases:tc9|Pathway analysis of a poorly annotated but sequenced plant genome]]** - Erik Alexandersson
+    - **[[public:loadedtestcases:tc9|Pathway analysis of a poorly annotated but sequenced plant genome]]** - Erik Alexandersson (Swedish University for Agricultural Sciences, Uppsala, Sweden)
     - **[[public:loadedtestcases:tc10|Gene prediction modelling for plants]]** - TBD
     - **[[public:loadedtestcases:tc11|Genome assembly of heterozygous diploid data]]** -TBD
-    - **[[public:loadedtestcases:tc12|Functional annotation of the potato genome]]** - Erik Alexandersson
+    - **[[public:loadedtestcases:tc12|Functional annotation of the potato genome]]** - Erik Alexandersson (Swedish University for Agricultural Sciences, Uppsala, Sweden)
-    - **[[public:loadedtestcases:tc13|Transcriptome and small RNA comparison of four phenotypically distinct cv “Primitivo” grapevine clones]]** - Annalisa Giampetruzzi
+    - **[[public:loadedtestcases:tc13|Transcriptome and small RNA comparison of four phenotypically distinct cv “Primitivo” grapevine clones]]** - Annalisa Giampetruzzi (Institute of Plant Virology CNR, Bari, Italy)
-    - **[[public:loadedtestcases:tc14|Improved cell factories]]**  - Mikko Arvas
+    - **[[public:loadedtestcases:tc14|Improved cell factories]]**  - Mikko Arvas (VTT Technical Research Centre of Finland, Espoo, Finland)
     - **[[public:loadedtestcases:tc15|Genetics, Genomics and Evolution of prolific breeds of domestic
-sheep (Ovis aries)]]** - Juha Kantanen
+sheep (Ovis aries)]]** - Juha Kantanen (MTT Agrifood Research Finland, Jokioinen, Finland)
+  * 16:20  Coffee Break
+  * 18:00  Coach
 **__13 December 2012__**
@@ Line 61: / Line 65: @@
 |5.) prepare a summary for discussion|
+  * 10:30  Coffee Break
   * 11:30 - 13:00  Reporting of the different sessions and general discussions
@@ Line 70: / Line 75: @@
   * 13:00 - 14:00  Lunch
-  * 14:00 - 15:30  Presentations of relevant data analysis tools - speaker to be defined
+  * 14:00 - 15:30  Presentations of relevant data analysis tools
-  - Oren Tzfadia - The MORPH algorithm: ranking candidate genes for membership in Arabidopsis thaliana and Solanum lycopersicum pathways
+  - Oren Tzfadia (Weizmann Institute of Science, Tel Aviv, Israel) - The MORPH algorithm: ranking candidate genes for membership in Arabidopsis thaliana and Solanum lycopersicum pathways
-  - Dimitris Vlachakis - Recipes to make the most out of your wetlab data in less than 10 minutes.
+  - Dimitris Vlachakis (Biomedical Research Foundation, Academy of Athens, Greece) - Recipes to make the most out of your wetlab data in less than 10 minutes.
-  - Jacques van Helden - A quick tour of [[http://rsat.bigre.ulb.ac.be/rsat/|Regulatory Sequence Analysis Tools]] (RSAT) and [[http://rsat.bigre.ulb.ac.be/neat/|Network Analysis Tools]] (NeAT).
+  - Jacques van Helden (Université Libre de Bruxelles, Bruxelles, Belgium) - A quick tour of Regulatory Sequence Analysis Tools (RSAT) and Network Analysis Tools (NeAT)
-  - Tatyana Goldberg - Loctree2 predicts localization for all domains of life
+  - Tatyana Goldberg (Technische Universität, München, Germany) - Loctree2 predicts localization for all domains of life
-  - Domenica D’Elia - HOCCLU2: a data mining tool for easily handling interactions data and discovering regulatory networks
+  - Domenica D’Elia (Institute for Biomedical Tachnology, Bari, Italy) and Gianvito Pio (University of Bari, Italy) - HOCCLU2: a data mining tool for easily handling interactions data and discovering regulatory networks
-  - Bruno Contreras Moreira - TBD
+  - Bruno Contreras Moreira (CSCI, Zaragoza, Spain) - Introducing get_homologues and footprintDB
-  - Petri Klemelä - Chipster: user-friendly analysis software for high-throughput data
+  - Petri Klemelä (IT Center for Science, Helsinki, Finland) - Chipster: user-friendly analysis software for high-throughput data
+  - Paul Kersey (European Bioinformatics Institute, Hinxton, GB) - Ensembl beyond humans: genomic resources for animals, plants and microbes
+  - Mikko Arvas (VTT Technical Research Centre of Finland) - Comparative genome-scale reconstruction of gapless metabolicnetworks for present and ancestral species
+  - Marco Masseroli (Politecnico di Milano, Milan, Italy) - Genomic and Proteomic Knowledge Base (GPKB) & Bio Search Computing (Bio-SeCo)
   * 15:30 - 18:30  Parallell session for test cases specific discussions in light of the results of the topics-wise discussions
@@ Line 88: / Line 96: @@
 |- propose other collaborators for the follow-up activity|
 |- keep minutes of discussion|
+  * 16:20  Coffee Break
@@ Line 98: / Line 107: @@
 |c) very difficult, scalability problem, tools completely missing, requires new developments (projects over years)|
+  * 10:30 Coffee Break
   * 11:00 - 13:00  Organization of the follow-up events to approach the solutions of some test cases

public/bioinf.1355132736.txt.gz · Last modified: 2019/02/12 09:04 (external edit)