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- | == Preliminary | + | == Programme == |
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**__12 December 2012__** | **__12 December 2012__** | ||
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* 14:00 - 14:30 Welcome by the chair Erik Bongcom-Rudloff and the local organizer Andreas Gisel | * 14:00 - 14:30 Welcome by the chair Erik Bongcom-Rudloff and the local organizer Andreas Gisel | ||
* 14:30 - 18:00 Presentation of the 15 selected test cases - each 10 plus some questions | * 14:30 - 18:00 Presentation of the 15 selected test cases - each 10 plus some questions | ||
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- | sheep (Ovis aries)]]** - Juha Kantanen | + | sheep (Ovis aries)]]** - Juha Kantanen |
+ | * 16:20 Coffee Break | ||
+ | * 18:00 Coach | ||
**__13 December 2012__** | **__13 December 2012__** | ||
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|5.) prepare a summary for discussion| | |5.) prepare a summary for discussion| | ||
+ | * 10:30 Coffee Break | ||
* 11:30 - 13:00 Reporting of the different sessions and general discussions | * 11:30 - 13:00 Reporting of the different sessions and general discussions | ||
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* 13:00 - 14:00 Lunch | * 13:00 - 14:00 Lunch | ||
- | * 14:00 - 15:30 Presentations of relevant data analysis tools - speaker to be defined | + | * 14:00 - 15:30 Presentations of relevant data analysis tools |
- | - Oren Tzfadia - The MORPH algorithm: ranking candidate genes for membership in Arabidopsis thaliana and Solanum lycopersicum pathways | + | - Oren Tzfadia |
- | - Dimitris Vlachakis - Recipes to make the most out of your wetlab data in less than 10 minutes. | + | - Dimitris Vlachakis |
- | - Jacques van Helden - A quick tour of [[http:// | + | - Jacques van Helden |
- | - Tatyana Goldberg - Loctree2 predicts localization for all domains of life | + | - Tatyana Goldberg |
- | - Domenica D’Elia - HOCCLU2: a data mining tool for easily handling interactions data and discovering regulatory networks | + | - Domenica D’Elia |
- | - Bruno Contreras Moreira - Introducing get_homologues and footprintDB | + | - Bruno Contreras Moreira |
- | - Petri Klemelä - Chipster: user-friendly analysis software for high-throughput data | + | - Petri Klemelä |
+ | - Paul Kersey (European Bioinformatics Institute, Hinxton, GB) - Ensembl beyond humans: genomic resources for animals, plants and microbes | ||
+ | - Mikko Arvas (VTT Technical Research Centre of Finland) - Comparative genome-scale reconstruction of gapless metabolicnetworks for present and ancestral species | ||
+ | - Marco Masseroli (Politecnico di Milano, Milan, Italy) - Genomic and Proteomic Knowledge Base (GPKB) & Bio Search Computing (Bio-SeCo) | ||
* 15:30 - 18:30 Parallell session for test cases specific discussions in light of the results of the topics-wise discussions | * 15:30 - 18:30 Parallell session for test cases specific discussions in light of the results of the topics-wise discussions | ||
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|- propose other collaborators for the follow-up activity| | |- propose other collaborators for the follow-up activity| | ||
|- keep minutes of discussion| | |- keep minutes of discussion| | ||
+ | * 16:20 Coffee Break | ||
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|c) very difficult, scalability problem, tools completely missing, requires new developments (projects over years)| | |c) very difficult, scalability problem, tools completely missing, requires new developments (projects over years)| | ||
+ | * 10:30 Coffee Break | ||
* 11:00 - 13:00 Organization of the follow-up events to approach the solutions of some test cases | * 11:00 - 13:00 Organization of the follow-up events to approach the solutions of some test cases | ||