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public:bioinf [2012/12/10 10:32] andreaspublic:bioinf [2019/02/12 09:04] (current) – external edit 127.0.0.1
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-== Preliminary Programme ==+== Programme ==  
 +([[public:bioinfo:update|see updates of the event]]) 
  
 **__12 December 2012__** **__12 December 2012__**
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     - **[[public:loadedtestcases:tc15|Genetics, Genomics and Evolution of prolific breeds of domestic     - **[[public:loadedtestcases:tc15|Genetics, Genomics and Evolution of prolific breeds of domestic
 sheep (Ovis aries)]]** - Juha Kantanen (MTT Agrifood Research Finland, Jokioinen, Finland) sheep (Ovis aries)]]** - Juha Kantanen (MTT Agrifood Research Finland, Jokioinen, Finland)
 +  * 16:20  Coffee Break
 +  * 18:00  Coach
  
 **__13 December 2012__** **__13 December 2012__**
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 |5.) prepare a summary for discussion| |5.) prepare a summary for discussion|
  
 +  * 10:30  Coffee Break
   * 11:30 - 13:00  Reporting of the different sessions and general discussions   * 11:30 - 13:00  Reporting of the different sessions and general discussions
  
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   * 13:00 - 14:00  Lunch   * 13:00 - 14:00  Lunch
-  * 14:00 - 15:30  Presentations of relevant data analysis tools - speaker to be defined +  * 14:00 - 15:30  Presentations of relevant data analysis tools 
-  - Oren Tzfadia (Weizmann Institute of Science, Tel Aviv) - The MORPH algorithm: ranking candidate genes for membership in Arabidopsis thaliana and Solanum lycopersicum pathways +  - Oren Tzfadia (Weizmann Institute of Science, Tel Aviv, Israel) - The MORPH algorithm: ranking candidate genes for membership in Arabidopsis thaliana and Solanum lycopersicum pathways 
-  - Dimitris Vlachakis (Biomedical Research Foundation, Academy of Athens) - Recipes to make the most out of your wetlab data in less than 10 minutes. +  - Dimitris Vlachakis (Biomedical Research Foundation, Academy of Athens, Greece) - Recipes to make the most out of your wetlab data in less than 10 minutes. 
-  - Jacques van Helden (Université Libre de Bruxelles, Bruxelles) - A quick tour of Regulatory Sequence Analysis Tools (RSAT) and Network Analysis Tools (NeAT) +  - Jacques van Helden (Université Libre de Bruxelles, Bruxelles, Belgium) - A quick tour of Regulatory Sequence Analysis Tools (RSAT) and Network Analysis Tools (NeAT) 
-  - Tatyana Goldberg (Technische Universität, München) - Loctree2 predicts localization for all domains of life +  - Tatyana Goldberg (Technische Universität, München, Germany) - Loctree2 predicts localization for all domains of life 
-  - Domenica D’Elia (institute for Biomedical Tachnology, Bari) - HOCCLU2: a data mining tool for easily handling interactions data and discovering regulatory networks +  - Domenica D’Elia (Institute for Biomedical Tachnology, Bari, Italy) and Gianvito Pio (University of Bari, Italy) - HOCCLU2: a data mining tool for easily handling interactions data and discovering regulatory networks 
-  - Bruno Contreras Moreira (CSCI, Zaragoza) - Introducing get_homologues and footprintDB +  - Bruno Contreras Moreira (CSCI, Zaragoza, Spain) - Introducing get_homologues and footprintDB 
-  - Petri Klemelä (IT Center for Science, Helsinki) - Chipster: user-friendly analysis software for high-throughput data+  - Petri Klemelä (IT Center for Science, Helsinki, Finland) - Chipster: user-friendly analysis software for high-throughput data 
 +  - Paul Kersey (European Bioinformatics Institute, Hinxton, GB) - Ensembl beyond humans: genomic resources for animals, plants and microbes 
 +  - Mikko Arvas (VTT Technical Research Centre of Finland) - Comparative genome-scale reconstruction of gapless metabolic networks for present and ancestral species 
 +  - Marco Masseroli (Politecnico di Milano, Milan, Italy) - Genomic and Proteomic Knowledge Base (GPKB) & Bio Search Computing (Bio-SeCo)
  
   * 15:30 - 18:30  Parallell session for test cases specific discussions in light of the results of the topics-wise discussions   * 15:30 - 18:30  Parallell session for test cases specific discussions in light of the results of the topics-wise discussions
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 |- propose other collaborators for the follow-up activity| |- propose other collaborators for the follow-up activity|
 |- keep minutes of discussion| |- keep minutes of discussion|
 +  * 16:20  Coffee Break
  
  
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 |c) very difficult, scalability problem, tools completely missing, requires new developments (projects over years)| |c) very difficult, scalability problem, tools completely missing, requires new developments (projects over years)|
  
 +  * 10:30 Coffee Break
   * 11:00 - 13:00  Organization of the follow-up events to approach the solutions of some test cases   * 11:00 - 13:00  Organization of the follow-up events to approach the solutions of some test cases
  
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