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Test Case Title
Genome assembly of heterozygous diploid data
Test Case Acronyme
HETERO
Test Case Class
Animals (Plants)
Contact person
Jacob Höglund, Biao Wang - EcolGen; Ignas Bunikis, Hossein Jorjani, Magnus Alm Rosenblad, Eva Hellmén - University of Uppsala
Contact
nd
Test Case Description
Many NGS projects will not have access to data from inbred lines. This will cause problems in the assembly. How can this be solved?
Background knowledge
Current technology generate short reads, or low coverage. Extent and nature of DNA duplications is unknown. Which NGS approach is best?
Initial state of the Test case
nd
Desired final state of the Test Case
nd
Test Case Work Plan
nd
Discussion
LF: this is a research topic, especially for multiploid genomes. At the moment no solution exist. We could invite people how worked on similar projects or specialised in phasing.
Trace: tc11