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http://www.allbioinformatics.eu/
Sat, 27 Apr 2024 08:52:19 +0000FeedCreator 1.8http://www.allbioinformatics.eu/lib/tpl/A_Centered_Perspective/images/favicon.icoAllBio
http://www.allbioinformatics.eu/
start - [NEWS]
http://www.allbioinformatics.eu/doku.php?id=start&rev=1662123481&do=diff
<p>
<img src="http://www.allbioinformatics.eu/lib/exe/fetch.php?w=650&tok=ee71b7&media=public:header4.jpg" class="mediacenter" loading="lazy" alt="" width="650" />
</p>
<h1 class="sectionedit1" id="allbio">AllBio</h1>
<div class="level1">
<p>
<strong>AllBio is there to help with the bioinformatics of life science projects All Bio-logical research fields.</strong>
<br/>
<br/>
</p>
<p>
<img src="http://www.allbioinformatics.eu/lib/exe/fetch.php?w=650&tok=6f1643&media=public:groupphoto_small.jpg" class="mediacenter" loading="lazy" title="Group of participants at the RNA-seq workshop in helsinki - Jan 2014 " alt="Group of participants at the RNA-seq workshop in helsinki - Jan 2014 " width="650" />
<em>The picture shows the participants to the “RNA-seq data analysis workshop” organised by the ALLBIO partner CSC, 8-10 January 2014.</em>
</p>
<p>
After sequencing the human genome the world spent a lot of time and money on the bioinformatics needed to harvest the wealth of information in those 23 chromosomes. AllBio will coordinate the efforts to make the human genome related technologies work too in fields like microbial, plant, and lifestock bioinformatics.
</p>
<p>
We reach out to these communities and ask that they make their bioinformatics wishes known. This can be done by either filling out an online <a href="http://www.allbioinformatics.eu/doku.php?id=public:testcasetempl" class="wikilink1" title="public:testcasetempl" data-wiki-id="public:testcasetempl">Test Case Form</a>, the <a href="http://www.allbioinformatics.eu/lib/exe/fetch.php?media=public:allbio_test_case_template.doc" class="media mediafile mf_doc" title="public:allbio_test_case_template.doc (1.7 MB)">Test Case template</a>, or by contacting any of the <a href="http://www.allbioinformatics.eu/doku.php?id=public:partners" class="wikilink1" title="public:partners" data-wiki-id="public:partners">AllBio partners.</a>
<br/>
<br/>
<br/>
<br/>
</p>
</div>
<!-- EDIT{"target":"section","name":"AllBio","hid":"allbio","codeblockOffset":0,"secid":1,"range":"50-1098"} -->
<h2 class="sectionedit2" id="news">NEWS</h2>
<div class="level2">
<p>
New articles <a href="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0086948" class="urlextern" title="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0086948" rel="ugc nofollow">PLOS</a>
<a href="http://www.biomedcentral.com/1752-0509/8/S2/I1/" class="urlextern" title="http://www.biomedcentral.com/1752-0509/8/S2/I1/" rel="ugc nofollow">BMC Systems Biology</a> acknowledge AllBio
<br/>
</p>
<p>
<em class="u"><strong>AllBio Project Closing Event</strong></em><strong>
<a href="http://www.allbioinformatics.eu/doku.php?id=public:agm2" class="wikilink1" title="public:agm2" data-wiki-id="public:agm2">AllBio Consortium Meeting</a></strong> 29 - 30 September 2014
<br/>
<a href="http://www.tgac.ac.uk" class="urlextern" title="http://www.tgac.ac.uk" rel="ugc nofollow">TGAC</a> and AllBio collaboration for TGAC’s new training suite <a href="http://www.seedquest.com/solutions.php?type=solution&id_article=53435&id_region=&id_category=&id_crop=" class="urlextern" title="http://www.seedquest.com/solutions.php?type=solution&id_article=53435&id_region=&id_category=&id_crop=" rel="ugc nofollow">see article</a>
</p>
<p>
<em class="u"><strong>DO NOT MISS THE NEXT ALLBIO EVENTS!</strong></em>
</p>
<ul>
<li class="level1"><div class="li"> <strong><a href="http://www.allbioinformatics.eu/doku.php?id=public:val" class="wikilink1" title="public:val" data-wiki-id="public:val">Validation and Training Workshops</a></strong> click to see more</div>
</li>
</ul>
</div>
<!-- EDIT{"target":"section","name":"NEWS","hid":"news","codeblockOffset":0,"secid":2,"range":"1099-"} -->administrator@undisclosed.example.com (administrator)Fri, 02 Sep 2022 12:58:01 +0000public:val
http://www.allbioinformatics.eu/doku.php?id=public:val&rev=1417089152&do=diff
<h2 class="sectionedit1" id="validation_and_training_workshops">Validation and Training Workshops</h2>
<div class="level2">
<p>
10 Validation workshops (see below ‘Workshop topics’) took place during the last year of the project.
</p>
<p>
These workshops consisted of a data hack-a-thon session and a training session. During the data hack-a-thon session bioinformaticians and but mainly life scientists worked together to challenge some solutions AllBio worked out together with external scientists.
</p>
</div>
<h5 id="embl-ebi">EMBL-EBI</h5>
<div class="level5">
<p>
Titel: <strong><a href="http://www.ebi.ac.uk/training/course/Agri-Omics" class="urlextern" title="http://www.ebi.ac.uk/training/course/Agri-Omics" rel="ugc nofollow">AllBio Plant and Pathogen Bioinformatics</a></strong> training course - 8 - 11 July 2014
</p>
</div>
<h5 id="cnr">CNR</h5>
<div class="level5">
<p>
Title: <strong><a href="http://allbioinformatics.eu/bari2014/" class="urlextern" title="http://allbioinformatics.eu/bari2014/" rel="ugc nofollow">Epigenetics, coding and non-coding RNAs- Challenging NGS data</a></strong> - 25 - 26 June 2014
</p>
</div>
<h5 id="uniman">UNIMAN</h5>
<div class="level5">
<p>
Title: <strong>Metagenomics Interoperability and Web Services Workshop</strong> - 10-12 April 2014, Amsterdam, The Netherlands
</p>
</div>
<h5 id="slu">SLU</h5>
<div class="level5">
<p>
Title: <strong><a href="http://teacher.bmc.uu.se/ALLBIO2014/" class="urlextern" title="http://teacher.bmc.uu.se/ALLBIO2014/" rel="ugc nofollow">Bioinformatics approaches to Identify causative sequence variants in farm animals</a></strong> Training course, Uppsala Sweden, 12 - 16. May 2014
</p>
</div>
<h5 id="sib">SIB</h5>
<div class="level5">
<p>
Title: <strong><a href="http://edu.isb-sib.ch/course/view.php?id=104" class="urlextern" title="http://edu.isb-sib.ch/course/view.php?id=104" rel="ugc nofollow">NGS methods for identification of mutations and large structural variants</a></strong> 11th -12th March 2014, Lausanne, Switzerland
</p>
</div>
<h5 id="csc">CSC</h5>
<div class="level5">
<p>
Title: <strong><a href="http://www.allbioinformatics.eu/doku.php?id=public:valid-csc" class="wikilink1" title="public:valid-csc" data-wiki-id="public:valid-csc">RNA-seq data analysis workshop</a></strong> 8th - 10th January 2014, Espoo, Finland
</p>
<p>
Title: <strong><a href="http://www.csc.fi/english/csc/courses/archive/chipseq2014" class="urlextern" title="http://www.csc.fi/english/csc/courses/archive/chipseq2014" rel="ugc nofollow">ChIP- and DNase-seq data analysis workshop, 16 - 19 September 2014, CSC, Helsinki, Finland</a></strong>
</p>
</div>
<h5 id="up">UP</h5>
<div class="level5">
<p>
Title: <strong><a href="http://teacher.bmc.uu.se/BIGDATA/Managing_Big_Data.pdf" class="urlextern" title="http://teacher.bmc.uu.se/BIGDATA/Managing_Big_Data.pdf" rel="ugc nofollow">
Tutorial: Comparative genome annotation methods
</a></strong> 29-30 April 2014, University of Potsdam, Campus Golm Karl-Liebknecht-Str. 24-25 House 25 Room D 002. Germany
</p>
<p>
Title: <strong>Comparative genome annotation methods</strong>
</p>
</div>
<h5 id="runmc">RUNMC</h5>
<div class="level5">
<p>
Title: <strong><a href="http://biosb.nl/education/course-portfolio/course-metagenomics-approaches-and-data-analysis/" class="urlextern" title="http://biosb.nl/education/course-portfolio/course-metagenomics-approaches-and-data-analysis/" rel="ugc nofollow">Bioinformatics of bacteriology</a></strong> Course: Metagenomics Approaches and Data Analysis, March 31, 2014 / April 2, 2014, Nijmegen, The Netherlands.
</p>
</div>
<h5 id="ki">KI</h5>
<div class="level5">
<p>
Title: <strong><a href="https://docs.google.com/forms/d/1gfUvWYW12pmnJ-wYKdDNi2coGbrn2vL0UpVQgN9h5WU/ viewform?usp=send_form" class="urlextern" title="https://docs.google.com/forms/d/1gfUvWYW12pmnJ-wYKdDNi2coGbrn2vL0UpVQgN9h5WU/ viewform?usp=send_form" rel="ugc nofollow">AllBio Metagenome data analysis! - 21. - 23. May 2014 - Science for Life Laboratory, Stockholm, Sweden</a></strong>
</p>
</div>
<h5 id="ulb">ULB</h5>
<div class="level5">
<p>
Title: <strong>AllBio Workshop: <a href="http://www.allbioinformatics.eu/doku.php?id=public:valid-ulb" class="wikilink1" title="public:valid-ulb" data-wiki-id="public:valid-ulb">Analyzing thousands of bacterial genomes:
gene annotation, metabolism, regulation</a></strong> - 23 - 25 June 2014, Marseille, France
</p>
</div>
bongcam@undisclosed.example.com (bongcam)publicThu, 27 Nov 2014 11:52:32 +0000public:tools_and_services
http://www.allbioinformatics.eu/doku.php?id=public:tools_and_services&rev=1416302617&do=diff
<p>
<img src="http://www.allbioinformatics.eu/lib/exe/fetch.php?w=650&tok=ee71b7&media=public:header4.jpg" class="mediacenter" loading="lazy" alt="" width="650" />
</p>
<h2 class="sectionedit1" id="inventory_of_available_tools_and_services_across_the_areas">Inventory of available tools and services across the areas</h2>
<div class="level2">
<p>
A comprehensive search for bioinformatics tools, databases and services was conducted throughout the project, focusing in particular on those relevant to animals, unicellular animals and plants,
and to those required for the completion of the test cases outlined in Working Package 1
</p>
<p>
The extensive list including the liks to the tools are available on the following site:
</p>
<p>
<a href="http://bioinformatics.hgen.slu.se/ALLBIO-TOOLS/" class="urlextern" title="http://bioinformatics.hgen.slu.se/ALLBIO-TOOLS/" rel="ugc nofollow">http://bioinformatics.hgen.slu.se/ALLBIO-TOOLS/</a>
</p>
</div>
<!-- EDIT{"target":"section","name":"Inventory of available tools and services across the areas","hid":"inventory_of_available_tools_and_services_across_the_areas","codeblockOffset":0,"secid":1,"range":"40-"} -->andreas@undisclosed.example.com (andreas)publicTue, 18 Nov 2014 09:23:37 +0000menu
http://www.allbioinformatics.eu/doku.php?id=menu&rev=1416295105&do=diff
<p>
* <a href="http://www.allbioinformatics.eu/doku.php?id=start" class="wikilink1" title="start" data-wiki-id="start">start</a>
Welcome on the AllBio webpage
</p>
<ul>
<li class="level1"><div class="li"> <a href="http://www.allbioinformatics.eu/doku.php?id=public:project" class="wikilink1" title="public:project" data-wiki-id="public:project">Project</a></div>
</li>
<li class="level2"><div class="li"> <a href="http://www.allbioinformatics.eu/doku.php?id=public:partners" class="wikilink1" title="public:partners" data-wiki-id="public:partners">Partners</a></div>
</li>
<li class="level2"><div class="li"> <a href="http://www.allbioinformatics.eu/doku.php?id=public:events" class="wikilink1" title="public:events" data-wiki-id="public:events">Events</a></div>
</li>
<li class="level2"><div class="li"> <a href="http://www.allbioinformatics.eu/doku.php?id=public:test_cases" class="wikilink1" title="public:test_cases" data-wiki-id="public:test_cases">Test Cases</a></div>
</li>
<li class="level2"><div class="li"> <a href="http://www.allbioinformatics.eu/doku.php?id=public:work_packages" class="wikilink1" title="public:work_packages" data-wiki-id="public:work_packages">Work Packages</a></div>
</li>
<li class="level2"><div class="li"> <a href="http://www.allbioinformatics.eu/doku.php?id=public:activities" class="wikilink1" title="public:activities" data-wiki-id="public:activities">Activities</a></div>
</li>
<li class="level2"><div class="li"> <a href="http://www.allbioinformatics.eu/doku.php?id=public:tools_and_services" class="wikilink1" title="public:tools_and_services" data-wiki-id="public:tools_and_services">Tools and Services</a></div>
</li>
<li class="level2"><div class="li"> <a href="http://www.allbioinformatics.eu/doku.php?id=internal:activities_internal" class="wikilink1" title="internal:activities_internal" data-wiki-id="internal:activities_internal">Activities Internal</a></div>
</li>
<li class="level2"><div class="li"> <a href="http://www.allbioinformatics.eu/doku.php?id=internal:test_cases_internal" class="wikilink1" title="internal:test_cases_internal" data-wiki-id="internal:test_cases_internal">Test Cases Internal</a></div>
</li>
<li class="level2"><div class="li"> <a href="http://www.allbioinformatics.eu/doku.php?id=internal:time_table" class="wikilink1" title="internal:time_table" data-wiki-id="internal:time_table">Time Table</a></div>
</li>
<li class="level2"><div class="li"> <a href="http://www.allbioinformatics.eu/doku.php?id=internal:deliverable" class="wikilink1" title="internal:deliverable" data-wiki-id="internal:deliverable">Deliverable</a></div>
</li>
<li class="level2"><div class="li"> <a href="http://www.allbioinformatics.eu/doku.php?id=internal:milestone" class="wikilink1" title="internal:milestone" data-wiki-id="internal:milestone">Milestone</a></div>
</li>
<li class="level2"><div class="li"> <a href="http://www.allbioinformatics.eu/doku.php?id=internal:reimbursement" class="wikilink1" title="internal:reimbursement" data-wiki-id="internal:reimbursement">Reimbursement</a></div>
</li>
<li class="level2"><div class="li"> <a href="http://www.allbioinformatics.eu/doku.php?id=internal:partner_work" class="wikilink1" title="internal:partner_work" data-wiki-id="internal:partner_work">Partner Work</a></div>
</li>
<li class="level2"><div class="li"> <a href="http://www.allbioinformatics.eu/doku.php?id=internal:shared_materiel" class="wikilink1" title="internal:shared_materiel" data-wiki-id="internal:shared_materiel">Shared Materiel</a></div>
</li>
<li class="level2"><div class="li"> <a href="http://www.allbioinformatics.eu/doku.php?id=internal:teaching_material" class="wikilink1" title="internal:teaching_material" data-wiki-id="internal:teaching_material">Teaching Material</a></div>
</li>
</ul>
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