Differences

This shows you the differences between two versions of the page.

--- public:hack4 [2013/09/09 13:19] – greg
+++ public:hack4 [2019/02/12 09:04] (current) – external edit 127.0.0.1
@@ Line 20: / Line 20: @@
 BC Amsterdam
+TC Leaders: Oren Tzfadia and Erik Alexandersson
-It will start Thursday Sept 19 at 12:00 with lunch in the hotel. Oren will take everybody to SARA after lunch.
+**Participants:**\\
-We will end Saturday with lunch (around 13).
-TC Leader: Oren Tzfadia and Erik Alexandersson
-Participants:\\
 Monika Brandt\\
-Agnieszka Danek (Jagiellonian University)\\
+Agnieszka Danek (Silesian University of Technology, Gliwice, Poland)\\
 Estelle Wera (SLU)\\
 Itziar Frades (SLU)\\
@@ Line 38: / Line 33: @@
 Sanjeev Kumar Sharma (James Hutton Institut)\\
 Gregoire Rossier (SIB)
+It will start Thursday Sept 19 at 12:00 at SARA.
+We will end Saturday with lunch (around 13).
+**Provisional program, schedule is flexible**
+**
+//Wednesday 18 September//**\\
+Arrival of first participants\\
+**//Thursday 19 September//**\\
+morning:                 Arrival of participants\\
+:00:                   Lunch at SARA\\
+:45:                   Welcome and AllBio project overview (Greg)\\
+**13:00 - 18:00**            **Hackathon part 1**\\
+:00:                   Introductory slides (Oren)\\
+:30:                   Overview of the test case (Erik)\\
+:45:                   Overview of the data sets, pre-processing and validation scheme (Didi, Oren)\\
+:20:                   Coffee break\\
+:35:                   Organize all data set on computers and SARA server. 1st round or pre-processing runs. In parallel, preparation of ‘gold standard’ discussion (Sanjeev, Erik)\\
+:15:                   Round table discussion on Potato metabolic genes as ‘gold standard’ for the annotation validation schemes (Sanjeev, Erik)\\
+:45:                   1st round of the validation scheme scripts runs\\
+:45:                   Return to CASA hotel\\
+:15:                   Day 1 summary, write a wrap-up mini report (at the hotel)\\
+:00:                   Dinner at CASA hotel\\
+**//Friday 20 September//**\\
+<8:30:                   Breakfast at CASA hotel\\
+:30:                    Taxi to SARA\\
+**9:00 - 12:45:**            **Hackathon part 2**\\
+:00:                    Refine scripts after analysis of 1st round results. Re-running the validation score. Define ‘stable’ scores and scoring schemes\\
+:45:                   Coffee break\\
+:00:                   Round table discussion – preparing for writing the summary report and 		delineating bullet points for a manuscript road map\\
+:45:                   Lunch at SARA\\
+**13:30 - 18:00:**            **Hackathon part 3**\\
+:30:                   Split to task sub-groups and run specific needed computational/biological analyses\\
+:00:                   Video conference (skype) with Kate Dreher from USA. Coffee provided\\
+:00:                   Continue running computational tasks and summarizing results\\
+:00:                   Taxi to CASA hotel\\
+:30 - 20:30            Free slot if needed\\
+:45:                   Walk for dinner at [[http://www.huizefrankendael.nl/en/home/|Restaurant Merkelbach]] (Middenweg 72)\\
+//**Saturday 21 September**//\\
+<8:45:                   Breakfast at CASA hotel\\
+:45:                    Check out\\
+**9:00 - 12:00:**            **Hackathon part 4** (hotel meeting room)\\
+:00:                    Recap video conference with Kate\\
+:45:                    Hackathon summary and perspectives\\
+:00:                   Lunch at CASA hotel\\
+:00:                   End of the event\\
 **Overview**

public/hack4.1378732756.txt.gz · Last modified: 2019/02/12 09:04 (external edit)