If you are interested in participating this Coordination Action please contact us!

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision		Previous revision
public:hack4 [2013/09/17 07:15] – gregpublic:hack4 [2019/02/12 09:04] (current) – external edit 127.0.0.1
Line 20: Line 20:
 1097 BC Amsterdam 1097 BC Amsterdam
  
- +TC Leaders: Oren Tzfadia and Erik Alexandersson
-It will start Thursday Sept 19 at 12:00 with lunch in the hotel. Oren will take everybody to SARA after lunch. +
- +
-We will end Saturday with lunch (around 13). +
- +
-**Provisional program** +
- +
-//Wednesday 18 September//\\ +
-arrival of 1st participants\\ +
- +
-//Thursday 19 September//\\ +
-morning:                 arrival of participants\\ +
-~12:00:                   lunch at CASA hotel\\ +
-~13:00:                   walk to SARA\\ +
-~13:30:                   hackathon part 1 (details to be completed)\\ +
-~19:00:                   return to CASA hotel\\ +
-20:00:                     dinner at CASA hotel\\ +
- +
-//Friday 20 September//\\ +
-early morning:          breakfast at CASA hotel\\ +
-8:45:                        walk to SARA\\ +
-9:15:                        hackathon part 2 (details to be completed)\\ +
-~13:00:                    lunch at SARA\\ +
-~14:00:                    hackathon part 3 (details to be completed)\\ +
-~19:30:                    return to CASA hotel\\ +
-~20h45:                   dinner at Restaurant Merkelbach (Middenweg 72)\\ +
- +
-Saturday 21 September\\ +
-early morning:          breakfast at CASA hotel\\ +
-8:45:                        check out\\ +
-9:00:                        hackathon summary and perspectives at CASA hotel (meeting room)\\ +
-~12:00:                    lunch at CASA hotel\\ +
-~13:00:                    end of the meeting\\ +
- +
-TC Leader: Oren Tzfadia and Erik Alexandersson+
  
 **Participants:**\\ **Participants:**\\
Line 67: Line 33:
 Sanjeev Kumar Sharma (James Hutton Institut)\\ Sanjeev Kumar Sharma (James Hutton Institut)\\
 Gregoire Rossier (SIB) Gregoire Rossier (SIB)
 +
 +
 +It will start Thursday Sept 19 at 12:00 at SARA.
 +
 +We will end Saturday with lunch (around 13).
 +
 +**Provisional program, schedule is flexible**
 +
 +**
 +//Wednesday 18 September//**\\
 +Arrival of first participants\\
 +
 +**//Thursday 19 September//**\\
 +morning:                 Arrival of participants\\
 +12:00:                   Lunch at SARA\\
 +12:45:                   Welcome and AllBio project overview (Greg)\\
 +**13:00 - 18:00**            **Hackathon part 1**\\
 +13:00:                   Introductory slides (Oren)\\
 +13:30:                   Overview of the test case (Erik)\\
 +13:45:                   Overview of the data sets, pre-processing and validation scheme (Didi, Oren)\\
 +14:20:                   Coffee break\\
 +14:35:                   Organize all data set on computers and SARA server. 1st round or pre-processing runs. In parallel, preparation of ‘gold standard’ discussion (Sanjeev, Erik)\\
 +16:15:                   Round table discussion on Potato metabolic genes as ‘gold standard’ for the annotation validation schemes (Sanjeev, Erik)\\
 +16:45:                   1st round of the validation scheme scripts runs\\
 +17:45:                   Return to CASA hotel\\
 +18:15:                   Day 1 summary, write a wrap-up mini report (at the hotel)\\
 +20:00:                   Dinner at CASA hotel\\
 +
 +**//Friday 20 September//**\\
 +<8:30:                   Breakfast at CASA hotel\\
 +8:30:                    Taxi to SARA\\
 +**9:00 - 12:45:**            **Hackathon part 2**\\
 +9:00:                    Refine scripts after analysis of 1st round results. Re-running the validation score. Define ‘stable’ scores and scoring schemes\\
 +10:45:                   Coffee break\\
 +11:00:                   Round table discussion – preparing for writing the summary report and delineating bullet points for a manuscript road map\\
 +12:45:                   Lunch at SARA\\
 +**13:30 - 18:00:**            **Hackathon part 3**\\
 +13:30:                   Split to task sub-groups and run specific needed computational/biological analyses\\
 +16:00:                   Video conference (skype) with Kate Dreher from USA. Coffee provided\\
 +17:00:                   Continue running computational tasks and summarizing results\\
 +18:00:                   Taxi to CASA hotel\\
 +19:30 - 20:30            Free slot if needed\\
 +20:45:                   Walk for dinner at [[http://www.huizefrankendael.nl/en/home/|Restaurant Merkelbach]] (Middenweg 72)\\
 +
 +//**Saturday 21 September**//\\
 +<8:45:                   Breakfast at CASA hotel\\
 +8:45:                    Check out\\
 +**9:00 - 12:00:**            **Hackathon part 4** (hotel meeting room)\\
 +9:00:                    Recap video conference with Kate\\
 +9:45:                    Hackathon summary and perspectives\\
 +12:00:                   Lunch at CASA hotel\\
 +13:00:                   End of the event\\
 +
 +
  
 **Overview** **Overview**
public/hack4.1379402121.txt.gz · Last modified: 2019/02/12 09:04 (external edit)
Trace: hack4