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public:hack4 [2013/09/17 12:41] – gregpublic:hack4 [2019/02/12 09:04] (current) – external edit 127.0.0.1
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 1097 BC Amsterdam 1097 BC Amsterdam
  
 +TC Leaders: Oren Tzfadia and Erik Alexandersson
  
-It will start Thursday Sept 19 at 12:00 with lunch in the hotel. Oren will take everybody to SARA after lunch.+**Participants:**\\ 
 +Monika Brandt\\ 
 +Agnieszka Danek (Silesian University of Technology, Gliwice, Poland)\\ 
 +Estelle Wera (SLU)\\ 
 +Itziar Frades (SLU)\\ 
 +Didi Amar (Weizmann Institute)\\ 
 +Tatyana Goldberg (Technische Universitaet Muenchen)\\ 
 +Erik Alexandersson (SLU)\\ 
 +Oren Tzfadia (Weizmann Institute)\\ 
 +Sanjeev Kumar Sharma (James Hutton Institut)\\ 
 +Gregoire Rossier (SIB) 
 + 
 + 
 +It will start Thursday Sept 19 at 12:00 at SARA.
  
 We will end Saturday with lunch (around 13). We will end Saturday with lunch (around 13).
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 **Provisional program, schedule is flexible** **Provisional program, schedule is flexible**
  
-//Wednesday 18 September//\\ +** 
-arrival of 1st participants\\+//Wednesday 18 September//**\\ 
 +Arrival of first participants\\
  
-//Thursday 19 September//\\+**//Thursday 19 September//**\\
 morning:                 Arrival of participants\\ morning:                 Arrival of participants\\
-12:00:                   Lunch at CASA hotel\\ +12:00:                   Lunch at SARA\\ 
-13:00:                   Walk to SARA\\ +12:45:                   Welcome and AllBio project overview (Greg)\\ 
-13:30:                   Welcome and AllBio project overview (Greg) +**13:00 - 18:00**            **Hackathon part 1**\\ 
-13:45 - 19:00            **hackathon part 1**\\ +13:00:                   Introductory slides (Oren)\\ 
-13:45:                   Introductory slides (Oren)\\ +13:30:                   Overview of the test case (Erik)\\ 
-14:15:                   Overview of the test case (Erik)\\ +13:45:                   Overview of the data sets, pre-processing and validation scheme (Didi, Oren)\\ 
-14:30:                   Overview of the data sets, pre-processing and validation scheme (Didi, Oren) +14:20:                   Coffee break\\ 
-15:05:                   Coffee break +14:35:                   Organize all data set on computers and SARA server. 1st round or pre-processing runs. In parallel, preparation of ‘gold standard’ discussion (Sanjeev, Erik)\\ 
-15:20:                   Organize all data set on computers and SARA server\\ +16:15:                   Round table discussion on Potato metabolic genes as ‘gold standard’ for the annotation validation schemes (Sanjeev, Erik)\\ 
-                         1st round or pre-processing runs +16:45:                   1st round of the validation scheme scripts runs\\ 
-                         In parallel, preparation of ‘gold standard’ discussion (Sanjeev, Erik)\\ +17:45:                   Return to CASA hotel\\ 
-17:00:                   Round table discussion on Potato metabolic genes as ‘gold standard’ for the annotation validation schemes (Sanjeev, Erik)\\ +18:15:                   Day 1 summary, write a wrap-up mini report (at the hotel)\\
-17:30:                   1st round of the validation scheme scripts runs +
-18:30:                   Day 1 summary, write a wrap-up mini report +
-19:00:                   Return to CASA hotel\\+
 20:00:                   Dinner at CASA hotel\\ 20:00:                   Dinner at CASA hotel\\
  
-//Friday 20 September//\\ +**//Friday 20 September//**\\ 
-early morning:          breakfast at CASA hotel\\ +<8:30:                   Breakfast at CASA hotel\\ 
-8:45:                        walk to SARA\\ +8:30:                    Taxi to SARA\\ 
-9:15:                        hackathon part 2 (details to be completed)\\ +**9:00 - 12:45:**            **Hackathon part 2**\\ 
-~13:00:                    lunch at SARA\\ +9:00:                    Refine scripts after analysis of 1st round results. Re-running the validation score. Define ‘stable’ scores and scoring schemes\\ 
-~14:00:                    hackathon part 3 (details to be completed)\\ +10:45:                   Coffee break\\ 
-~19:30:                    return to CASA hotel\\ +11:00:                   Round table discussion – preparing for writing the summary report and delineating bullet points for a manuscript road map\\ 
-~20h45:                   dinner at Restaurant Merkelbach (Middenweg 72)\\+12:45:                   Lunch at SARA\\ 
 +**13:30 - 18:00:**            **Hackathon part 3**\\ 
 +13:30:                   Split to task sub-groups and run specific needed computational/biological analyses\\ 
 +16:00:                   Video conference (skype) with Kate Dreher from USA. Coffee provided\\ 
 +17:00:                   Continue running computational tasks and summarizing results\\ 
 +18:00:                   Taxi to CASA hotel\\ 
 +19:30 - 20:30            Free slot if needed\\ 
 +20:45:                   Walk for dinner at [[http://www.huizefrankendael.nl/en/home/|Restaurant Merkelbach]] (Middenweg 72)\\
  
-Saturday 21 September\\ +//**Saturday 21 September**//\\ 
-early morning:          breakfast at CASA hotel\\ +<8:45:                   Breakfast at CASA hotel\\ 
-8:45:                        check out\\ +8:45:                    Check out\\ 
-9:00:                        hackathon summary and perspectives at CASA hotel (meeting room)\\ +**9:00 - 12:00:**            **Hackathon part 4** (hotel meeting room)\\ 
-~12:00:                    lunch at CASA hotel\\ +9:00:                    Recap video conference with Kate\\ 
-~13:00:                    end of the meeting\\+9:45:                    Hackathon summary and perspectives\\ 
 +12:00:                   Lunch at CASA hotel\\ 
 +13:00:                   End of the event\\
  
-TC Leader: Oren Tzfadia and Erik Alexandersson 
  
-**Participants:**\\ 
-Monika Brandt\\ 
-Agnieszka Danek (Silesian University of Technology, Gliwice, Poland)\\ 
-Estelle Wera (SLU)\\ 
-Itziar Frades (SLU)\\ 
-Didi Amar (Weizmann Institute)\\ 
-Tatyana Goldberg (Technische Universitaet Muenchen)\\ 
-Erik Alexandersson (SLU)\\ 
-Oren Tzfadia (Weizmann Institute)\\ 
-Sanjeev Kumar Sharma (James Hutton Institut)\\ 
-Gregoire Rossier (SIB) 
  
 **Overview** **Overview**
public/hack4.1379421676.txt.gz · Last modified: 2019/02/12 09:04 (external edit)
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