If you are interested in participating this Coordination Action please contact us!

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision		Previous revision
public:valid-ulb [2014/05/19 04:14] – [Analyzing thousands of bacterial genomes: gene annotation, metabolism, regulation] jvanheldpublic:valid-ulb [2019/02/12 09:04] (current) – external edit 127.0.0.1
Line 7: Line 7:
 ==Practical info== ==Practical info==
  
-  * Date: June 23-25, 2014+| Date      |June 23-25, 2014  |{{:public:sugiton_1538x1024.jpg?350 |}} | 
 +| Location  |[[http://www.novotel.com/gb/hotel-0911-novotel-marseille-vieux-port/|Hotel Novotel Marseille Vieux Port]]   | ::: | 
 +| Organizer   |<Jacques.van-Helden@univ-amu.fr> | ::: | 
 +| Participants |~20  | ::: | 
 +| Cost|0€   | ::: | 
 +| Registration |<color red>We apologize but due to a high request we reached the max number of participants before the deadline  
 +\\ 
 +**THE REGISTRATION IS CLOSED**</color>| ::: |
  
-  * Location: Marseille, France 
  
-  * Site: Aix-Marseille Université (AMU) 
- 
-  * Organizer: Jacques van Helden (Jacques.van-Helden@univ-amu.fr) 
- 
-  * Expected participants: ~ 20 (no more than 25) 
- 
-  * Registration cost: 0€ 
- 
-  * Registration deadline: June 11 
- 
-  * Registration form: {{:public:bioinfo:allbio_training_ws_marseille_2014-06_registration.doc|}} 
- 
-{{:public:sugiton_1538x1024.jpg?512|}} 
  
 ==Funding== ==Funding==
Line 44: Line 37:
 The course does not require any computing skills. A basic knowledge of the Linux environment is welcome, but not required. The course does not require any computing skills. A basic knowledge of the Linux environment is welcome, but not required.
  
-==Computer environment==+==Contents==
  
-The training room is equipped with Linux computers, but participants are welcome to bring their own laptop if they wish to work in their familiar environment.  
- 
-==Contents== 
  
 This training course will include This training course will include
   - Short talks illustrating the functionalities offered by bioinformatics resources suited for the analysis of multiple bacterial genomes.    - Short talks illustrating the functionalities offered by bioinformatics resources suited for the analysis of multiple bacterial genomes. 
   -  Practicals based on concrete study cases:   -  Practicals based on concrete study cases:
-     * multiple genomes from bacteria; +    * collecting multiple genomes from bacteria; 
-     * compare annotations between different species; +    * comparing annotations between different species; 
-     * extract metabolic information for selected genomes; +    * extracting metabolic information for selected genomes; 
-     * compare lists of annotated enzymes with annotated pathways; +    * metabolic projection: coverage of reference pathways by the enzymes found in a genome; 
-     * build and analyze phylogenetic profiles; +    * phylogenetic profiling: detecting genes co-occurrences across genomes; 
-     * detect putative cis-regulatory elements.+    * phylogenetic footprints: detection of conserved cis-regulatory elements.
   - Practicals on programmatic use of the tools:   - Practicals on programmatic use of the tools:
      * extracting data for multiple genomes;      * extracting data for multiple genomes;
      * combining data from diverse sources.      * combining data from diverse sources.
 +
 +==Computer environment==
 +
 +If possible, participants are invited to bring their own laptop if they wish to work in their familiar environment. We will rent additional computers for participants who do not dispose of a laptop. 
  
 ==Schedule== ==Schedule==
public/valid-ulb.1400472894.txt.gz · Last modified: 2019/02/12 09:04 (external edit)
Trace: