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| public:bioinf [2012/12/10 10:32] – andreas | public:bioinf [2012/12/18 08:10] – andreas | ||
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| - | == Preliminary | + | == Programme == |
| + | ([[public: | ||
| **__12 December 2012__** | **__12 December 2012__** | ||
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| - **[[public: | - **[[public: | ||
| sheep (Ovis aries)]]** - Juha Kantanen (MTT Agrifood Research Finland, Jokioinen, Finland) | sheep (Ovis aries)]]** - Juha Kantanen (MTT Agrifood Research Finland, Jokioinen, Finland) | ||
| + | * 16:20 Coffee Break | ||
| + | * 18:00 Coach | ||
| **__13 December 2012__** | **__13 December 2012__** | ||
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| |5.) prepare a summary for discussion| | |5.) prepare a summary for discussion| | ||
| + | * 10:30 Coffee Break | ||
| * 11:30 - 13:00 Reporting of the different sessions and general discussions | * 11:30 - 13:00 Reporting of the different sessions and general discussions | ||
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| * 13:00 - 14:00 Lunch | * 13:00 - 14:00 Lunch | ||
| - | * 14:00 - 15:30 Presentations of relevant data analysis tools - speaker to be defined | + | * 14:00 - 15:30 Presentations of relevant data analysis tools |
| - | - Oren Tzfadia (Weizmann Institute of Science, Tel Aviv) - The MORPH algorithm: ranking candidate genes for membership in Arabidopsis thaliana and Solanum lycopersicum pathways | + | - Oren Tzfadia (Weizmann Institute of Science, Tel Aviv, Israel) - The MORPH algorithm: ranking candidate genes for membership in Arabidopsis thaliana and Solanum lycopersicum pathways |
| - | - Dimitris Vlachakis (Biomedical Research Foundation, Academy of Athens) - Recipes to make the most out of your wetlab data in less than 10 minutes. | + | - Dimitris Vlachakis (Biomedical Research Foundation, Academy of Athens, Greece) - Recipes to make the most out of your wetlab data in less than 10 minutes. |
| - | - Jacques van Helden (Université Libre de Bruxelles, Bruxelles) - A quick tour of Regulatory Sequence Analysis Tools (RSAT) and Network Analysis Tools (NeAT) | + | - Jacques van Helden (Université Libre de Bruxelles, Bruxelles, Belgium) - A quick tour of Regulatory Sequence Analysis Tools (RSAT) and Network Analysis Tools (NeAT) |
| - | - Tatyana Goldberg (Technische Universität, | + | - Tatyana Goldberg (Technische Universität, |
| - | - Domenica D’Elia (institute | + | - Domenica D’Elia (Institute |
| - | - Bruno Contreras Moreira (CSCI, Zaragoza) - Introducing get_homologues and footprintDB | + | - Bruno Contreras Moreira (CSCI, Zaragoza, Spain) - Introducing get_homologues and footprintDB |
| - | - Petri Klemelä (IT Center for Science, Helsinki) - Chipster: user-friendly analysis software for high-throughput data | + | - Petri Klemelä (IT Center for Science, Helsinki, Finland) - Chipster: user-friendly analysis software for high-throughput data |
| + | - Paul Kersey (European Bioinformatics Institute, Hinxton, GB) - Ensembl beyond humans: genomic resources for animals, plants and microbes | ||
| + | - Mikko Arvas (VTT Technical Research Centre of Finland) - Comparative genome-scale reconstruction of gapless metabolic networks for present and ancestral species | ||
| + | - Marco Masseroli (Politecnico di Milano, Milan, Italy) - Genomic and Proteomic Knowledge Base (GPKB) & Bio Search Computing (Bio-SeCo) | ||
| * 15:30 - 18:30 Parallell session for test cases specific discussions in light of the results of the topics-wise discussions | * 15:30 - 18:30 Parallell session for test cases specific discussions in light of the results of the topics-wise discussions | ||
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| |- propose other collaborators for the follow-up activity| | |- propose other collaborators for the follow-up activity| | ||
| |- keep minutes of discussion| | |- keep minutes of discussion| | ||
| + | * 16:20 Coffee Break | ||
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| |c) very difficult, scalability problem, tools completely missing, requires new developments (projects over years)| | |c) very difficult, scalability problem, tools completely missing, requires new developments (projects over years)| | ||
| + | * 10:30 Coffee Break | ||
| * 11:00 - 13:00 Organization of the follow-up events to approach the solutions of some test cases | * 11:00 - 13:00 Organization of the follow-up events to approach the solutions of some test cases | ||