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public:bioinf [2012/12/12 09:20] – andreas | public:bioinf [2012/12/18 08:10] – andreas | ||
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- | == Preliminary | + | == Programme == |
- | {{:public:hand_out.pdf|Hands-on}} | + | ([[public:bioinfo: |
**__12 December 2012__** | **__12 December 2012__** | ||
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- **[[public: | - **[[public: | ||
sheep (Ovis aries)]]** - Juha Kantanen (MTT Agrifood Research Finland, Jokioinen, Finland) | sheep (Ovis aries)]]** - Juha Kantanen (MTT Agrifood Research Finland, Jokioinen, Finland) | ||
+ | * 16:20 Coffee Break | ||
+ | * 18:00 Coach | ||
**__13 December 2012__** | **__13 December 2012__** | ||
* 09:00 - 11:30 Topic wise parallel sessions to discuss the test cases | * 09:00 - 11:30 Topic wise parallel sessions to discuss the test cases | ||
- | {{: | + | |
^=> We will divide the work in 4 parallel groups, one for each of the following topics:^ | ^=> We will divide the work in 4 parallel groups, one for each of the following topics:^ | ||
|- data formats / standardization and workflows| | |- data formats / standardization and workflows| | ||
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|5.) prepare a summary for discussion| | |5.) prepare a summary for discussion| | ||
+ | * 10:30 Coffee Break | ||
* 11:30 - 13:00 Reporting of the different sessions and general discussions | * 11:30 - 13:00 Reporting of the different sessions and general discussions | ||
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* 13:00 - 14:00 Lunch | * 13:00 - 14:00 Lunch | ||
- | * 14:00 - 15:30 Presentations of relevant data analysis tools - speaker to be defined | + | * 14:00 - 15:30 Presentations of relevant data analysis tools |
- Oren Tzfadia (Weizmann Institute of Science, Tel Aviv, Israel) - The MORPH algorithm: ranking candidate genes for membership in Arabidopsis thaliana and Solanum lycopersicum pathways | - Oren Tzfadia (Weizmann Institute of Science, Tel Aviv, Israel) - The MORPH algorithm: ranking candidate genes for membership in Arabidopsis thaliana and Solanum lycopersicum pathways | ||
- Dimitris Vlachakis (Biomedical Research Foundation, Academy of Athens, Greece) - Recipes to make the most out of your wetlab data in less than 10 minutes. | - Dimitris Vlachakis (Biomedical Research Foundation, Academy of Athens, Greece) - Recipes to make the most out of your wetlab data in less than 10 minutes. | ||
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- Petri Klemelä (IT Center for Science, Helsinki, Finland) - Chipster: user-friendly analysis software for high-throughput data | - Petri Klemelä (IT Center for Science, Helsinki, Finland) - Chipster: user-friendly analysis software for high-throughput data | ||
- Paul Kersey (European Bioinformatics Institute, Hinxton, GB) - Ensembl beyond humans: genomic resources for animals, plants and microbes | - Paul Kersey (European Bioinformatics Institute, Hinxton, GB) - Ensembl beyond humans: genomic resources for animals, plants and microbes | ||
+ | - Mikko Arvas (VTT Technical Research Centre of Finland) - Comparative genome-scale reconstruction of gapless metabolicnetworks for present and ancestral species | ||
+ | - Marco Masseroli (Politecnico di Milano, Milan, Italy) - Genomic and Proteomic Knowledge Base (GPKB) & Bio Search Computing (Bio-SeCo) | ||
* 15:30 - 18:30 Parallell session for test cases specific discussions in light of the results of the topics-wise discussions | * 15:30 - 18:30 Parallell session for test cases specific discussions in light of the results of the topics-wise discussions | ||
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|- propose other collaborators for the follow-up activity| | |- propose other collaborators for the follow-up activity| | ||
|- keep minutes of discussion| | |- keep minutes of discussion| | ||
+ | * 16:20 Coffee Break | ||
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|c) very difficult, scalability problem, tools completely missing, requires new developments (projects over years)| | |c) very difficult, scalability problem, tools completely missing, requires new developments (projects over years)| | ||
+ | * 10:30 Coffee Break | ||
* 11:00 - 13:00 Organization of the follow-up events to approach the solutions of some test cases | * 11:00 - 13:00 Organization of the follow-up events to approach the solutions of some test cases | ||