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- | Dr. Paul Kersey leads the Ensembl Genomes team at the EBI, which provides services for genome-scale data from non-vertebrate species, primarily through the use of the Ensembl software platform. The team integrates data from across the taxonomic space, and collaborates closely with particular groups involved in genome annotation and the development of domain-specific resources. | + | [[http:// |
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WormBase 2012: more genomes, more data, new website | WormBase 2012: more genomes, more data, new website | ||
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Karen Yook, Todd W Harris, Tamberlyn Bieri, Abigail Cabunoc, Juancarlos Chan, Wen J Chen, Paul Davis, Norie de la Cruz, Adrian Duong, Ruihua Fang, Uma Ganesan, Christian Grove, Kevin Howe, Snehalata Kadam, Ranjana Kishore, Raymond Lee, Yuling Li, Hans-Michael Muller, Cecilia Nakamura, Bill Nash, Philip Ozersky, Michael Paulini, Daniela Raciti, Arun Rangarajan, Gary Schindelman, | Karen Yook, Todd W Harris, Tamberlyn Bieri, Abigail Cabunoc, Juancarlos Chan, Wen J Chen, Paul Davis, Norie de la Cruz, Adrian Duong, Ruihua Fang, Uma Ganesan, Christian Grove, Kevin Howe, Snehalata Kadam, Ranjana Kishore, Raymond Lee, Yuling Li, Hans-Michael Muller, Cecilia Nakamura, Bill Nash, Philip Ozersky, Michael Paulini, Daniela Raciti, Arun Rangarajan, Gary Schindelman, | ||
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Nucleic Acids Research 40 D735-D741 2012. | Nucleic Acids Research 40 D735-D741 2012. | ||
Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species | Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species | ||
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Paul J Kersey, Daniel M Staines, Daniel Lawson, Eugene Kulesha, Paul Derwent, Jay C Humphrey, Daniel ST Hughes, Stephan Keenan, Arnaud Kerhornou, Gautier Koscielny, Nicholas Langridge, Mark D McDowall, Karine Megy, Uma Maheswari, Michael Nuhn, Michael Paulini, Helder Pedro, Iliana Toneva, Derek Wilson, Andrew Yates, Ewan Birney | Paul J Kersey, Daniel M Staines, Daniel Lawson, Eugene Kulesha, Paul Derwent, Jay C Humphrey, Daniel ST Hughes, Stephan Keenan, Arnaud Kerhornou, Gautier Koscielny, Nicholas Langridge, Mark D McDowall, Karine Megy, Uma Maheswari, Michael Nuhn, Michael Paulini, Helder Pedro, Iliana Toneva, Derek Wilson, Andrew Yates, Ewan Birney | ||
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Nucleic Acids Research 40 D91-97 2012. | Nucleic Acids Research 40 D91-97 2012. | ||
PomBase: a comprehensive online resource for fission yeast | PomBase: a comprehensive online resource for fission yeast | ||
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Valerie Wood, Midori A Harris, Mark D McDowall, Kim Rutherford, Brendan W Vaughan, Daniel M Staines, Martin Aslett, Antonia Lock, Jürg Bähler, Paul J Kersey, Stephen G Oliver | Valerie Wood, Midori A Harris, Mark D McDowall, Kim Rutherford, Brendan W Vaughan, Daniel M Staines, Martin Aslett, Antonia Lock, Jürg Bähler, Paul J Kersey, Stephen G Oliver | ||
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Nucleic Acids Research 40 D695-699 2012. | Nucleic Acids Research 40 D695-699 2012. | ||
Assemblathon 1: A competitive assessment of de novo short read assembly methods | Assemblathon 1: A competitive assessment of de novo short read assembly methods | ||
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Dent A Earl, Keith Bradnam, John St John, Aaron Darling, Dawei Lin, Joseph Faas, Hung On Ken Yu, Buffalo Vince, Daniel R Zerbino, Mark Diekhans, Ngan Nguyen, Pramila Nuwantha, Ariyaratne Wing-Kin Sung, Zemin Ning, Matthias Haimel, Jared T Simpson, Nuno A Fronseca, İnanç Birol, T Roderick Docking, Isaac Y Ho, Daniel S Rokhsar, Rayan Chikhi, Dominique Lavenier, Guillaume Chapuis, Delphine Naquin, Nicolas Maillet, Michael C Schatz, David R Kelly, Adam M Phillippy, Sergey Koren, Shiaw-Pyng Yang, Wei Wu, Wen-Chi Chou, Anuj Srivastava, Timothy I Shaw, J Graham Ruby, Peter Skewes-Cox, Miguel Betegon, Michelle T Dimon, Victor Solovyev, Petr Kosarev, Denis Vorobyev, Ricardo Ramirez-Gonzalez, | Dent A Earl, Keith Bradnam, John St John, Aaron Darling, Dawei Lin, Joseph Faas, Hung On Ken Yu, Buffalo Vince, Daniel R Zerbino, Mark Diekhans, Ngan Nguyen, Pramila Nuwantha, Ariyaratne Wing-Kin Sung, Zemin Ning, Matthias Haimel, Jared T Simpson, Nuno A Fronseca, İnanç Birol, T Roderick Docking, Isaac Y Ho, Daniel S Rokhsar, Rayan Chikhi, Dominique Lavenier, Guillaume Chapuis, Delphine Naquin, Nicolas Maillet, Michael C Schatz, David R Kelly, Adam M Phillippy, Sergey Koren, Shiaw-Pyng Yang, Wei Wu, Wen-Chi Chou, Anuj Srivastava, Timothy I Shaw, J Graham Ruby, Peter Skewes-Cox, Miguel Betegon, Michelle T Dimon, Victor Solovyev, Petr Kosarev, Denis Vorobyev, Ricardo Ramirez-Gonzalez, | ||
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Genome Res. 2011. 21: 2224-2241 | Genome Res. 2011. 21: 2224-2241 | ||
Multiple reference genomes and transcriptomes for Arabidopsis thaliana | Multiple reference genomes and transcriptomes for Arabidopsis thaliana | ||
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Xiangchao Gan, Oliver Stegle, Jonas Behr, Joshua G Steffen, Philipp Drewe, Katie L Hildebrand, Rune Lyngsoe, Sebastian J Schultheiss, | Xiangchao Gan, Oliver Stegle, Jonas Behr, Joshua G Steffen, Philipp Drewe, Katie L Hildebrand, Rune Lyngsoe, Sebastian J Schultheiss, | ||
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Nature 2011. 477: | Nature 2011. 477: | ||
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