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public:eccb-ulb [2014/08/14 17:55] – created andreaspublic:eccb-ulb [2019/02/12 09:04] (current) – external edit 127.0.0.1
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 ==ECCB 2014 Tutorial== ==ECCB 2014 Tutorial==
-//+\\
 ====Analysis of Cis-Regulatory Motifs from High-Throughput sequences==== ====Analysis of Cis-Regulatory Motifs from High-Throughput sequences====
  
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 There are still some places available for this tutorial: There are still some places available for this tutorial:
  
-ECCB Tutorial T01 
-Analysis of Cis-Regulatory Motifs from High-Throughput Sequence Sets 
  
 Date: Saturday Sept 6, 2014 Date: Saturday Sept 6, 2014
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 110 € (academic) or 60 € (student) 110 € (academic) or 60 € (student)
  
-----------     Short description     ----------+==Short description==
  
 This tutorial aims at introducing the theoretical principles and This tutorial aims at introducing the theoretical principles and
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----------    Teachers    ----------+==Teachers==
  
-- Jacques van Helden, Aix-Marseille Université (France) +  * Jacques van Helden, Aix-Marseille Université (France) 
-- Morgane Thomas-Chollier,  Ecole Normale Supérieure (France) +  * Morgane Thomas-Chollier,  Ecole Normale Supérieure (France) 
-- Carl Herrmann, University Heidelberg (Germany). +  * Carl Herrmann, University Heidelberg (Germany). 
-- Alejandra Medina-Rivera, SickKids Research Institute, Toronto (Canada)+  * Alejandra Medina-Rivera, SickKids Research Institute, Toronto (Canada)
  
-----------   Description   ----------+==Description==
  
 Next Generation Sequencing led to the development of novel methods Next Generation Sequencing led to the development of novel methods
-(ChIP-seq, FAIRE-seq, clip-seq, ) to acquire massive data about+(ChIP-seq, FAIRE-seq, Clip-seq, ) to acquire massive data about
 diverse signals involved in genome regulation and function diverse signals involved in genome regulation and function
 (cis-regulation, chromatin conformation, RNA maturation, (cis-regulation, chromatin conformation, RNA maturation,
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 motifs from full-scaled NGS datasets (typically covering tens of Mb). motifs from full-scaled NGS datasets (typically covering tens of Mb).
  
-----------    Contents    ----------+==  Contents==
  
 The tutorial will be organized in 2 half days: The tutorial will be organized in 2 half days:
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 - Building control sets to estimate the rates of false positives. - Building control sets to estimate the rates of false positives.
  
-----------   Topics not covered   ----------+==Topics not covered==
  
 Other steps for the analysis of ChIP-seq data (e.g. read mapping, peak Other steps for the analysis of ChIP-seq data (e.g. read mapping, peak
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 discovery and matching). discovery and matching).
  
-----------   Target audience   ----------+==Target audience==
  
 The course is addressed to bioinformaticians and biologists. The The course is addressed to bioinformaticians and biologists. The
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 services. services.
  
-----------   In practice   ----------+==In practice==
  
-* Participants will need to bring their own laptop.+  * Participants will need to bring their own laptop.
  
-* All command-line programs will be run on the IFB cloud platform+  * All command-line programs will be run on the IFB cloud platform
  (https://cloud.france-bioinformatique.fr/) managed by Christophe  (https://cloud.france-bioinformatique.fr/) managed by Christophe
  Blanchet (IBCP, Lyon, France). Each participant will be given a  Blanchet (IBCP, Lyon, France). Each participant will be given a
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  virtual machine with RSAT.  virtual machine with RSAT.
  
-* Wireless internet will be available at the conference venue.+  * Wireless internet will be available at the conference venue.
  
-* An indicative reading list will be available a few weeks before the+  * An indicative reading list will be available a few weeks before the
  tutorial.  tutorial.
  
-* The hands-on will be organized in a cookbook mode: we will+  * The hands-on will be organized in a cookbook mode: we will
  distribute protocols explaining the steps to solve selected test  distribute protocols explaining the steps to solve selected test
  cases.  cases.
  
-* For the practicals, we ensure that there is no need to transfer data+  * For the practicals, we ensure that there is no need to transfer data
  from the conference room to the servers.  from the conference room to the servers.
  
-----------   Funding   ----------+==Funding==
  
-This tutorial is funded by the ALLBIO project+This tutorial is funded by the **ALLBIO** project
 (http://www.allbioinformatics.eu/), whose goal is to establish the (http://www.allbioinformatics.eu/), whose goal is to establish the
 link between bioinformatics and biologist communities who express link between bioinformatics and biologist communities who express
 uncovered needs for other fields than human genomics (microbial, uncovered needs for other fields than human genomics (microbial,
 plant, livestock). plant, livestock).
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