If you are interested in participating this Coordination Action please contact us!
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- | =====ALLBIO Workshop===== | + | {{ public: |
- | ===on Bioinformatics | + | |
+ | =====ALLBIO Workshop | ||
+ | {{: | ||
+ | |||
+ | The AllBio community building workshop in Uppsala, Sweden was a successful and stimulating event. | ||
+ | |||
+ | SLU and SLU Global Bioinformatics Centre recently hosted the " | ||
+ | |||
+ | 30 participants attended the event, and 8 selected presentations were held by representatives of the animal, plant, and microbial research fields. The focus of the talks was on difficulties in *omics data analysis, and group discussions led to several test cases being collected for the development of bioinformatics tools in future efforts led by AllBio. | ||
+ | |||
+ | Below find the programme of the workshop: | ||
+ | |||
+ | 10:00 Introduction to ALLBIO | ||
+ | |||
+ | 10:30 Coffee | ||
+ | |||
+ | 10:45 Presentations: | ||
+ | * Ola Spjuth - UPPMAX | ||
+ | * Hans Ronne - Algal genome sequencing | ||
+ | * Robert Söderlund - Whole genome based SNP-typing of bacteria | ||
+ | * Ashfaq Ali - RNA-seq and proteomics in potato | ||
+ | |||
+ | 12:00 Lunch | ||
+ | |||
+ | 13:30 Presentations: | ||
+ | * Jacob Höglund, Biao Wang - Bioinformatics for a non model organism | ||
+ | * Erik Alexandersson - Annotation of potatogenome | ||
+ | * Eva Hellmén - Canine tumour analysis | ||
+ | * Magnus Alm Rosenblad - De novo-sequencing of marine organisms | ||
+ | |||
+ | 14:30 Coffee | ||
+ | |||
+ | 14:45 Group discussions aiming to identifying new test cases and important conferences/ | ||
+ | |||
+ | 15:30 Discussion with short presentations from the group discussions | ||
+ | |||
+ | 16:00 Closing of the event | ||
+ | // | ||
+ | // | ||
+ | // | ||
+ | // | ||
+ | |||
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+ | |||
+ | === Call for the AllBio | ||
+ | |||
+ | AllBio is a concerted effort of 10 bioinformatics academic institutes and interfaces | ||
+ | between the agricultural sciences, microbiology, | ||
+ | project is to identify and develop bioinformatics tools and databases to solve problems | ||
+ | for the scientific communities. | ||
+ | |||
+ | **We would hereby like to invite you to attend the AllBio community building event in | ||
+ | Uppsala, which will take place on May 3 in Uppsala, Sweden.** ({{: | ||
+ | |||
+ | There are myriads of bioinformatics tools within each discipline that have been developed | ||
+ | by members in the respective areas, and although the tools within the !elds are known to | ||
+ | experts in the speci!c communities, | ||
+ | biological/ | ||
+ | |||
+ | As part of the bioinformatics community we would like to work on detecting gaps in | ||
+ | existing tools to handle biological data. We will identify your needs in a form which you | ||
+ | will help to fill out, describing the issue(s) that you want solved, which methods you have | ||
+ | tried before and how you would ideally see the results visualised. The test cases created | ||
+ | during the workshop will be forwarded to the AllBio consortium to define which challenges | ||
+ | should be met by bioinformatics tools from the perspective of the end user. | ||
+ | |||
+ | AllBio will be able to financially support a limited numbers of participants to this workshop. | ||
+ | To work efficiently during the day we would like to ask you to submit a short | ||
+ | abstract. | ||
+ | |||
+ | The abstract should be divided into 4 parts: | ||
+ | |||
+ | - Biological background of the bioinformatics problem | ||
+ | - Nature of data to be analysed | ||
+ | - Nature of bottleneck in the data analysis process | ||
+ | - Ideal workflow and end result of the analysis process | ||
+ | |||
+ | The abstract should not exceed one page! | ||
+ | |||
+ | Abstracts are submitted to **henrik.lysell@slu.se** | ||
+ | **Deadline of abstract submission will be 30 April 2012.** | ||
+ | |||
+ | Participation in the workshop will be free, including coffee breaks and dinner, and we | ||
+ | invite all abstract providers to participate in this event in Uppsala. | ||
+ | All abstracts will be analysed and forwarded to the AllBio community, shown on the AllBio portal and to be subject for future selection for detailed processing within the AllBio consortium. | ||
+ | |||
+ | ===Preliminary programme: | ||
+ | * Registration and breakfast | ||
+ | * Selected presentations | ||
+ | * Lunch | ||
+ | * Round table discussions of test cases | ||
+ | * Dinner | ||
+ | |||
+ | Updates on this event: www.allbioinformatics.eu | ||
+ | |||
+ | Find the venue (Ultuna, Undervisningshuset, | ||
+ | www.slu.se/ | ||
+ | |||
+ | Organised by SLU and SciLife lab. | ||
+ | |||
+ | |||
+ | {{ public: |