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+ | ~~NOTOC~~ | ||
===== SVERIGES LANTBRUKSUNIVERSITET Sweden ===== | ===== SVERIGES LANTBRUKSUNIVERSITET Sweden ===== | ||
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Main campuses are located at Alnarp, Skara, Ultuna and Umeå. Research and teaching activities are carried out throughout the country. | Main campuses are located at Alnarp, Skara, Ultuna and Umeå. Research and teaching activities are carried out throughout the country. | ||
- | [[http:// | + | [[http:// |
- | ]] | + | |
- | ==== Prof. Erik Bongcam-‐Rudloff ==== | + | ==== Prof. Erik Bongcam‐Rudloff ==== |
Associate Professor Erik Bongcam-Rudloff, | Associate Professor Erik Bongcam-Rudloff, | ||
+ | [[http:// | ||
COMMISSIONS: | COMMISSIONS: | ||
ONGOING | ONGOING | ||
- | • Coordinator of the FP7 project ALLBIO: “Broadening the Bioinformatics Infrastructure to unicellular, | + | * Coordinator of the FP7 project ALLBIO: “Broadening the Bioinformatics Infrastructure to unicellular, |
- | • Coordinator COST Action: Next Generation Sequencing Data Analysis Network” SeqAhead, www.nextgensequencing.org | + | * Coordinator COST Action: Next Generation Sequencing Data Analysis Network” SeqAhead, www.nextgensequencing.org |
- | • Board Member of the International Society for computational Biology (ISCB www.iscb.org ), 2012-2015. | + | * Board Member of the International Society for computational Biology (ISCB www.iscb.org ), 2012-2015. |
- | • Executive board member of EMBnet, 2010-2013. | + | * Executive board member of EMBnet, 2010-2013. |
- | • Board member BILS (Bioinformatics Infrastructure for Life Sciences, Sweden: http:// | + | * Coordinator WP7 in the EU FP7 Affinomics project, www.affinomics.org, |
- | • Coordinator WP7 in the EU FP7 Affinomics project, www.affinomics.org, | + | * Board member of UPPMAX, Uppsala Multidisciplinary Center for Advanced Computational |
- | • Board member of UPPMAX, Uppsala Multidisciplinary Center for Advanced Computational | + | * Board member of the National Supercomputer Centre in Sweden (NSC). Linköping, Sweden. www.nsc.liu.se |
- | • Board member of the National Supercomputer Centre in Sweden (NSC). Linköping, Sweden. www.nsc.liu.se | + | * Editor in Chief for EMBnet.Journal since 2000. http:// |
- | • Editor in Chief for EMBnet.Journal since 2000. http:// | + | * Director of eBioinformatics.org creators of eBiotools and BioX. www.ebioinformatics.org. |
- | • Director of eBioinformatics.org creators of eBiotools and BioX. www.ebioinformatics.org. | + | |
- | + | ||
PAST | PAST | ||
- | • Chairman of EMBnet, a science-based group of collaborating bioinformatics nodes | + | * Chairman of EMBnet, a science-based group of collaborating bioinformatics nodes |
- | throughout Europe and a number of nodes outside Europe. www.embnet.org. 2003-2009. | + | |
- | • Executive board member of EMBRACE, a FP6 funded Network of Excellence, which encompasses computational biologists from 17 institutes in 11 European countries. www.embracegrid.info. 2005-2010. WP4 Coordinator. | + | * Executive board member of EMBRACE, a FP6 funded Network of Excellence, which encompasses computational biologists from 17 institutes in 11 European countries. www.embracegrid.info. 2005-2010. WP4 Coordinator. |
- | • Member of the WP4 in the ESFRI BBMRI project. www.bbmri.org | + | * Member of the WP4 in the ESFRI BBMRI project. www.bbmri.org |
- | • Member of the WP10 in the ESFRI ELIXIR project http:// | + | * Member of the WP10 in the ESFRI ELIXIR project http:// |
- | • Coordinator WP4 Eurokup, EU COST action. www.eurokup.org | + | * Coordinator WP4 Eurokup, EU COST action. www.eurokup.org |
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//Desktop applications:// | //Desktop applications:// | ||
- | • eBioTools: is a collection of more than 300 open source bioinformatics programs, www.ebioinformatics.org. | + | * eBioTools: is a collection of more than 300 open source bioinformatics programs, www.ebioinformatics.org. |
- | • eBioX: A highly popular graphic user interface for the eBiotools programmes. eBioX brings easy-to-use sequence analysis to Mac-using biologists. www.ebioinformatics.org | + | * eBioX: A highly popular graphic user interface for the eBiotools programmes. eBioX brings easy-to-use sequence analysis to Mac-using biologists. www.ebioinformatics.org |
+ | * | ||
+ | // | ||
+ | * Evaller: In collaboration with Livsmedelsverket: | ||
+ | * eBioKit: eBioKit is a compilation of online open source databases and software hosted on the same server and connected to educational resources. Test site: http:// | ||
+ | * MolMeth: MolMeth is a structured database that provides free access to methods used in molecular biology and molecular medicine: www.molmeth.org. | ||
+ | * SeqScoring: | ||
+ | |||
+ | === Publications 2012 === | ||
+ | 1. Klingström T, Soldatova L, Stevens R, et. al. - " | ||
+ | |||
+ | 2. Biao Wang, Robert Ekblom, Todd A. Castoe, et. al. - " | ||
+ | |||
+ | 3. Anne Fischer, Beth Shapiro, Cecilia Muriuki, et. al. - "The origin of the ' | ||
+ | |||
+ | 4. Harald Mischak, John P.A., Ioannidis Angel Argiles, et. al. - " | ||
+ | |||
+ | |||
+ | === Publications 2011 === | ||
+ | |||
+ | 1. SEQscoring: a tool to facilitate the interpretation of data generated with next generation sequencing technologies. Katarina Truvé, Oscar Eriksson, Martin Norling, Maria Wilbe, Evan Mauceli, Kerstin Lindblad-Toh, | ||
+ | |||
+ | 2. SEQAHEAD - COST Action BM1006: Next Generation Sequencing Data Analysis Network , EMBnet.journal, | ||
+ | |||
+ | 3. The first sequenced carnivore genome shows complex host-endogenous retrovirus relationships. Martínez Barrio A, Ekerljung M, Jern P, Benachenhou F, Sperber GO, Bongcam-Rudloff E, Blomberg J, Andersson G. PLoS One. 2011 May 12; | ||
- | //WEB-BASED ANALYSIS SYSTEMS:// | + | 4. A novel unstable duplication upstream |
- | • Evaller: | + | Olsson M, Meadows JR, Truvé K, Rosengren Pielberg G, Puppo F, Mauceli E, Quilez J, Tonomura N, Zanna G, Docampo MJ, Bassols A, Avery AC, Karlsson EK, Thomas A, Kastner DL, Bongcam-Rudloff E, Webster MT, Sanchez A, Hedhammar A, Remmers EF, Andersson L, Ferrer L, Tintle L, Lindblad-Toh K. |
- | • eBioKit: | + | PLoS Genet. 2011 Mar;7(3):e1001332. Epub 2011 Mar 17. |
- | • MolMeth: | + | |
- | • SeqScoring: | + | |
+ | 5. Contributions of the EMERALD project to assessing and improving microarray data quality. Beisvåg V, Kauffmann A, Malone J, Foy C, Salit M, Schimmel H, Bongcam-Rudloff E, Landegren U, Parkinson H, Huber W, Brazma A, Sandvik AK, Kuiper M. Biotechniques. 2011 Jan; |