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public:slu [2012/02/03 15:18] – [Prof. Erik Bongcam-­‐Rudloff] bongcampublic:slu [2019/02/12 09:04] (current) – external edit 127.0.0.1
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 {{ public:header4.jpg?nolink&650 |}} {{ public:header4.jpg?nolink&650 |}}
 +
 +~~NOTOC~~
  
 ===== SVERIGES LANTBRUKSUNIVERSITET Sweden ===== ===== SVERIGES LANTBRUKSUNIVERSITET Sweden =====
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 Main campuses are located at Alnarp, Skara, Ultuna and Umeå. Research and teaching activities are carried out throughout the country. Main campuses are located at Alnarp, Skara, Ultuna and Umeå. Research and teaching activities are carried out throughout the country.
  
-[[http://www.slu.se/en/ +[[http://www.slu.se/en/]]
-]]+
  
-==== Prof. Erik Bongcam-­‐Rudloff ====+==== Prof. Erik Bongcam­‐Rudloff ====
  
 Associate Professor Erik Bongcam-Rudloff, is a doctor in medical sciences and a computer scientist. Associate Professor Erik Bongcam-Rudloff, is a doctor in medical sciences and a computer scientist.
-[[www.rudloff.se]]+[[http://www.rudloff.se]]
  
 COMMISSIONS: COMMISSIONS:
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   * Board Member of the International Society for computational Biology (ISCB www.iscb.org ), 2012-2015.   * Board Member of the International Society for computational Biology (ISCB www.iscb.org ), 2012-2015.
   * Executive board member of EMBnet, 2010-2013.   * Executive board member of EMBnet, 2010-2013.
-  * Board member BILS (Bioinformatics Infrastructure for Life Sciences, Sweden: http://www.bils.se 
   * Coordinator WP7 in the EU FP7 Affinomics project, www.affinomics.org, 2010-2014   * Coordinator WP7 in the EU FP7 Affinomics project, www.affinomics.org, 2010-2014
   * Board member of UPPMAX, Uppsala Multidisciplinary Center for Advanced Computational Sciences www.uppmax.uu.se.    * Board member of UPPMAX, Uppsala Multidisciplinary Center for Advanced Computational Sciences www.uppmax.uu.se. 
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   * SeqScoring: Use the information to score mutations found by large re-sequencing projects. Finds positions for conserved elements among different species and present the results on a graphical way: www.seqscoring.net.    * SeqScoring: Use the information to score mutations found by large re-sequencing projects. Finds positions for conserved elements among different species and present the results on a graphical way: www.seqscoring.net. 
  
 +=== Publications 2012 ===
 +1. Klingström T, Soldatova L, Stevens R, et. al. - "Workshop on laboratory protocol standards for the molecular methods database" N Biotechnol. 2012 Jun 2. [Epub ahead of print]
 +
 +2. Biao Wang, Robert Ekblom, Todd A. Castoe, et. al. - "Transcriptome sequencing of black grouse (Tetrao tetrix) for immune gene discovery and microsatellite development" 10.1098/rsob.120054 Open Biol April 2012
 +
 +3. Anne Fischer, Beth Shapiro, Cecilia Muriuki, et. al. - "The origin of the 'Mycoplasma mycoides cluster' coincides with domestication of ruminants" 2012. PLoS ONE 7(4): e36150. doi:10.1371/journal.pone.0036150
 +
 +4. Harald Mischak, John P.A., Ioannidis Angel Argiles, et. al. - "Implementation of proteomic biomarkers: making it work. European Journal of Clinical Investigation" Article first published online: 21 APR 2012. DOI: 10.1111/j.1365-2362.2012.02674.x
 +
 +
 +=== Publications 2011 ===
 +
 +1. SEQscoring: a tool to facilitate the interpretation of data generated with next generation sequencing technologies. Katarina Truvé, Oscar Eriksson, Martin Norling, Maria Wilbe, Evan Mauceli, Kerstin Lindblad-Toh, Erik Bongcam-Rudloff. EMBnet.journal. 2011, Vol 17, no 1, pp 38-45 
 +
 +2. SEQAHEAD - COST Action BM1006: Next Generation Sequencing Data Analysis Network , EMBnet.journal, 2011, Vol 17, no1, pp 7-9
 +
 +3. The first sequenced carnivore genome shows complex host-endogenous retrovirus relationships. Martínez Barrio A, Ekerljung M, Jern P, Benachenhou F, Sperber GO, Bongcam-Rudloff E, Blomberg J, Andersson G. PLoS One. 2011 May 12;6(5):e19832.
 +
 +4. A novel unstable duplication upstream of HAS2 predisposes to a breed-defining skin phenotype and a periodic fever syndrome in Chinese Shar-Pei dogs.
 +Olsson M, Meadows JR, Truvé K, Rosengren Pielberg G, Puppo F, Mauceli E, Quilez J, Tonomura N, Zanna G, Docampo MJ, Bassols A, Avery AC, Karlsson EK, Thomas A, Kastner DL, Bongcam-Rudloff E, Webster MT, Sanchez A, Hedhammar A, Remmers EF, Andersson L, Ferrer L, Tintle L, Lindblad-Toh K.
 +PLoS Genet. 2011 Mar;7(3):e1001332. Epub 2011 Mar 17.
 +
 +5. Contributions of the EMERALD project to assessing and improving microarray data quality. Beisvåg V, Kauffmann A, Malone J, Foy C, Salit M, Schimmel H, Bongcam-Rudloff E, Landegren U, Parkinson H, Huber W, Brazma A, Sandvik AK, Kuiper M. Biotechniques. 2011 Jan;50(1):27-31.
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