Warning: Undefined variable $opt in /var/www/html/allbio/lib/tpl/A_Centered_Perspective/tpl_functions.php on line 61







If you are interested in participating this Coordination Action please contact us!

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision		Previous revision
Last revisionBoth sides next revision
public:ulb [2012/09/21 07:57] – [Prof. Jacques van Helden] jvanheldpublic:ulb [2012/09/21 09:44] – [Publications] jvanheld
Line 23: Line 23:
 Web site: [[http://rsat.ulb.ac.be/neat/|http://rsat.ulb.ac.be/neat/]] Web site: [[http://rsat.ulb.ac.be/neat/|http://rsat.ulb.ac.be/neat/]]
  
-Since 2005, the RSAT suite has been complemented by a series of specialized tools for the analysis of biomolecular networks. The « Network Analysis Tools » (NeAT, http://rsat.ulb.ac.be/neat/) (11) enable the analysis of various types of biomolecular networks: protein interactions, gene regulation, horizontal transfer between bacterial genomes, etc. The metabolic pathway discovery tools have also been integrated in the NeAT suite. +Since 2005, the RSAT suite has been complemented by a series of specialized tools for the analysis of biomolecular networks. The software suite Network Analysis Tools (NeAT) supoprts the analysis of various types of biomolecular networks: protein interactions, gene regulation, horizontal transfer between bacterial genomes, etc. The metabolic pathway discovery tools have also been integrated in the NeAT suite. 
  
 == Assessment of bioinformatics approaches == == Assessment of bioinformatics approaches ==
Line 32: Line 32:
 ==== Publications ==== ==== Publications ====
  
 +=== Recent publications ===
  
 +  * Thomas-Chollier M, Darbo E, Herrmann C, Defrance M, Thieffry D, van Helden J. (2012). A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs. Nat Protoc 7(8): 1551-1568 [[http://www.ncbi.nlm.nih.gov/pubmed/22836136|PMID
 +22836136]]
  
 +  * Jacques van Helden, Ariane Toussaint and Denis Thieffry (2012). Bacterial Molecular Networks. Methods in Molecular Biology, Volume 804 (28 chapters) [[http://www.springer.com/life+science/microbiology/book/978-1-61779-360-8|Publisher's site]]
 +
 +  * van Helden, J., Toussaint, A. and Thieffry, D. (2012). Bacterial molecular networks: bridging the gap between functional genomics and dynamical modelling. Methods Mol Biol 804, 1-11 [[http://www.ncbi.nlm.nih.gov/pubmed/22144145|PMID 22144145]]
 +
 +  * Faust, K. and van Helden, J. (2012). Predicting Metabolic Pathways by Sub-network Extraction. Methods Mol Biol 804, 107-30.[[http://www.ncbi.nlm.nih.gov/pubmed/22144151|PMID 22144151]]
 +
 +  * Thomas-Chollier M, Herrmann C, Defrance M, Sand O, Thieffry D, van Helden J. (2012). RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets. Nucleic Acids Res 40(4): e31. [[http://www.ncbi.nlm.nih.gov/pubmed/22156162|PMID 22156162]]  [[http://nar.oxfordjournals.org/content/early/2011/12/08/nar.gkr1104.full?keytype=ref&ijkey=zOvloLjtKzL73F8|Open access]]
 +
 +== Full list of publications ==
 +
 +[[http://www.bigre.ulb.ac.be/Users/jvanheld/publications_JvH.html|http://www.bigre.ulb.ac.be/Users/jvanheld/publications_JvH.html]]
  
public/ulb.txt · Last modified: 2019/02/12 09:04 by 127.0.0.1
Trace: