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public:ulb [2012/09/21 08:19] – [Publications] jvanheldpublic:ulb [2012/09/21 09:44] – [Publications] jvanheld
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 ==== Publications ==== ==== Publications ====
  
 +=== Recent publications ===
  
 +  * Thomas-Chollier M, Darbo E, Herrmann C, Defrance M, Thieffry D, van Helden J. (2012). A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs. Nat Protoc 7(8): 1551-1568 [[http://www.ncbi.nlm.nih.gov/pubmed/22836136|PMID
 +22836136]]
  
-<html> +  * Jacques van Helden, Ariane Toussaint and Denis Thieffry (2012). Bacterial Molecular Networks. Methods in Molecular Biology, Volume 804 (28 chapters) [[http://www.springer.com/life+science/microbiology/book/978-1-61779-360-8|Publisher's site]]
-<ol> +
-      <li> +
- Thomas-Chollier M, Darbo E, Herrmann C, Defrance M, Thieffry +
- D, van Helden J. (2012). A complete workflow for the analysis +
- of full-size ChIP-seq (and similar) data sets using +
- peak-motifs. Nat Protoc 7(8): 1551-1568.  [<a target='_blank' +
- href='http://www.ncbi.nlm.nih.gov/pubmed/22836136'>PMID +
- 22836136</a>] +
-      </li>+
  
-      <li> +  * van Helden, J., Toussaint, A. and Thieffry, D. (2012). Bacterial molecular networks: bridging the gap between functional genomics and dynamical modelling. Methods Mol Biol 804, 1-11 [[http://www.ncbi.nlm.nih.gov/pubmed/22144145|PMID 22144145]]
- <u>Book edition:</u>  +
- Jacques van Helden, Ariane Toussaint and Denis +
- Thieffry (2012). Bacterial Molecular Networks. Methods in Molecular +
- Biology, Volume 804 (28 chapters).  +
- [<a target='_blank' href='http://www.springer.com/life+sciences/microbiology/book/978-1-61779-360-8'>Publisher's site</a>] +
-      </li>+
  
-      <li> +  * Faust, K. and van Helden, J. (2012). Predicting Metabolic Pathways by Sub-network Extraction. Methods Mol Biol 804, 107-30.[[http://www.ncbi.nlm.nih.gov/pubmed/22144151|PMID 22144151]]
- van Helden, J., Toussaint, A. and Thieffry, D. (2012). Bacterial +
- molecular networks: bridging the gap between functional genomics and +
- dynamical modelling. Methods Mol Biol 804, 1-11. +
- [<a target='_blank' href='http://www.ncbi.nlm.nih.gov/pubmed/22144145'>PMID 22144145</a>] +
-      </li>+
  
-      <li> +  * Thomas-Chollier M, Herrmann C, Defrance M, Sand O, Thieffry D, van Helden J. (2012). RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets. Nucleic Acids Res 40(4): e31. [[http://www.ncbi.nlm.nih.gov/pubmed/22156162|PMID 22156162]]  [[http://nar.oxfordjournals.org/content/early/2011/12/08/nar.gkr1104.full?keytype=ref&ijkey=zOvloLjtKzL73F8|Open access]]
- Faust, K. and van Helden, J. (2012). Predicting Metabolic Pathways +
- by Sub-network Extraction. Methods Mol Biol 804, 107-30. +
- [<a target='_blank' href='http://www.ncbi.nlm.nih.gov/pubmed/22144151'>PMID 22144151</a>] +
-      </li> +
- +
-      <li> +
- Thomas-Chollier M, Herrmann C, Defrance M, Sand O, Thieffry D, +
- van Helden J. (2012). RSAT peak-motifs: motif analysis in +
- full-size ChIP-seq datasets. Nucleic Acids Res 40(4): e31. +
- [<a target='_blank' +
- href='http://www.ncbi.nlm.nih.gov/pubmed/22156162'>PMID +
- 22156162</a>] [<a target='_blank' +
- href='http://nar.oxfordjournals.org/content/early/2011/12/08/nar.gkr1104.full?keytype=ref&ijkey=zOvloLjtKzL73F8'>Open +
- access</a>] +
-      </li> +
-</ol> +
- +
-</html>+
  
 == Full list of publications == == Full list of publications ==
  
 +[[http://www.bigre.ulb.ac.be/Users/jvanheld/publications_JvH.html|http://www.bigre.ulb.ac.be/Users/jvanheld/publications_JvH.html]]
  
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