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--- public:ulb [2012/09/21 07:57] – [Prof. Jacques van Helden] jvanheld
+++ public:ulb [2019/02/12 09:04] (current) – external edit 127.0.0.1
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 Web site: [[http://rsat.ulb.ac.be/neat/|http://rsat.ulb.ac.be/neat/]]
-Since 2005, the RSAT suite has been complemented by a series of specialized tools for the analysis of biomolecular networks. The « Network Analysis Tools » (NeAT, http://rsat.ulb.ac.be/neat/) (11) enable the analysis of various types of biomolecular networks: protein interactions, gene regulation, horizontal transfer between bacterial genomes, etc. The metabolic pathway discovery tools have also been integrated in the NeAT suite.
+Since 2005, the RSAT suite has been complemented by a series of specialized tools for the analysis of biomolecular networks. The software suite Network Analysis Tools (NeAT) supoprts the analysis of various types of biomolecular networks: protein interactions, gene regulation, horizontal transfer between bacterial genomes, etc. The metabolic pathway discovery tools have also been integrated in the NeAT suite.
 == Assessment of bioinformatics approaches ==
@@ Line 32: / Line 32: @@
 ==== Publications ====
+=== Recent publications ===
+  * Thomas-Chollier M, Darbo E, Herrmann C, Defrance M, Thieffry D, van Helden J. (2012). A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs. Nat Protoc 7(8): 1551-1568 [[http://www.ncbi.nlm.nih.gov/pubmed/22836136|PMID
+22836136]]
+  * Jacques van Helden, Ariane Toussaint and Denis Thieffry (2012). Bacterial Molecular Networks. Methods in Molecular Biology, Volume 804 (28 chapters) [[http://www.springer.com/life+science/microbiology/book/978-1-61779-360-8|Publisher's site]]
+  * van Helden, J., Toussaint, A. and Thieffry, D. (2012). Bacterial molecular networks: bridging the gap between functional genomics and dynamical modelling. Methods Mol Biol 804, 1-11 [[http://www.ncbi.nlm.nih.gov/pubmed/22144145|PMID 22144145]]
+  * Faust, K. and van Helden, J. (2012). Predicting Metabolic Pathways by Sub-network Extraction. Methods Mol Biol 804, 107-30.[[http://www.ncbi.nlm.nih.gov/pubmed/22144151|PMID 22144151]]
+  * Thomas-Chollier M, Herrmann C, Defrance M, Sand O, Thieffry D, van Helden J. (2012). RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets. Nucleic Acids Res 40(4): e31. [[http://www.ncbi.nlm.nih.gov/pubmed/22156162|PMID 22156162]]  [[http://nar.oxfordjournals.org/content/early/2011/12/08/nar.gkr1104.full?keytype=ref&ijkey=zOvloLjtKzL73F8|Open access]]
+== Full list of publications ==
+[[http://www.bigre.ulb.ac.be/Users/jvanheld/publications_JvH.html|http://www.bigre.ulb.ac.be/Users/jvanheld/publications_JvH.html]]

public/ulb.1348214247.txt.gz · Last modified: 2019/02/12 09:04 (external edit)