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public:uniman [2012/02/01 10:04] – [Prof. Teresa Attwood] attwoodpublic:uniman [2019/02/12 09:04] (current) – external edit 127.0.0.1
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 ===== THE UNIVERSITY OF MANCHESTER United Kingdom ===== ===== THE UNIVERSITY OF MANCHESTER United Kingdom =====
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 Terri Attwood is a biophysicist by training, having received her BSc and PhD from Leeds University in 1982 and 1984. As a postdoc, she became interested in protein sequence and structure analysis and, in 1993, was awarded a prestigious Royal Society University Research Fellowship to develop tools for computational analysis of protein families: the first 5 years of the fellowship were held at University College London, and the last 4 at the University of Manchester, where she became Professor of Bioinformatics in 2001.  Terri Attwood is a biophysicist by training, having received her BSc and PhD from Leeds University in 1982 and 1984. As a postdoc, she became interested in protein sequence and structure analysis and, in 1993, was awarded a prestigious Royal Society University Research Fellowship to develop tools for computational analysis of protein families: the first 5 years of the fellowship were held at University College London, and the last 4 at the University of Manchester, where she became Professor of Bioinformatics in 2001. 
  
-Her work on protein sequence analysis (especially of G protein-coupled receptors) led to the development  of various databases: e.g., PRINTS (www.bioinf.manchester.ac.uk/dbbrowser/PRINTS), InterPro (www.ebi.ac.uk/interpro), CADRE (www.cadre-genomes.org.uk/). She has also pioneered and co-developed a range of software tools: e.g., CINEMA/Utopia (utopia.cs.man.ac.uk/utopia/), MINOTAUR (www.bioinf.manchester.ac.uk/dbbrowser/minotaur/about.html), EMBER (www.ember.man.ac.uk/). +Her work on protein sequence analysis (especially of G protein-coupled receptors) led to the development  of various databases: e.g., PRINTS (www.bioinf.manchester.ac.uk/dbbrowser/PRINTS), InterPro (www.ebi.ac.uk/interpro), CADRE (www.cadre-genomes.org.uk). She has also pioneered and co-developed a range of software tools: e.g., CINEMA/Utopia (utopia.cs.man.ac.uk/utopia), MINOTAUR (www.bioinf.manchester.ac.uk/dbbrowser/minotaur/about.html), EMBER (www.ember.man.ac.uk). 
  
-More recently, her interests have extended to semantic integration of research data with scholarly publications, in order to bring static documents to ‘life’. In particular, with Steve Pettifer, she ran a pilot project with Portland Press Ltd. to create the //Semantic Biochemical Journal// by embedding Utopia functionality directly into static PDF articles. The //Semantic BJ// was launched in 2009, powered by Utopia Documents (www.biochemj.org/bj/semantic_faq.htm/).+More recently, her interests have extended to semantic integration of research data with scholarly publications, in order to bring static documents to ‘life’. In particular, with Steve Pettifer, she ran a pilot project with Portland Press Ltd. to create the //Semantic Biochemical Journal// by embedding Utopia functionality directly into static PDF articles. The //Semantic BJ// was launched in 2009, powered by Utopia Documents (www.biochemj.org/bj/semantic_faq.htm).
  
-In her spare time, she Chairs EMBnet, the Global Bioinformatics Network (www.embnet.org/), and sits on the Executive Board of the International Society for Biocuration (http://biocurator.org/). She is currently Vice Chair of the COST Action NGS Data Analysis Network, SeqAhead (www.seqahead.eu/) and co-Chair of Working Group 4 of COST Action EuroKUP (www.eurokup.org/).  +In her spare time, she Chairs EMBnet, the Global Bioinformatics Network (www.embnet.org), and sits on the Executive Board of the International Society for Biocuration (http://biocurator.org). She is currently Co-Chair of the Bioinformatics Training Network (www.biotnet.org), Vice Chair of the COST Action NGS Data Analysis Network, SeqAhead (www.seqahead.eu) and co-Chair of Working Group 4 of COST Action EuroKUP (www.eurokup.org).  
  
  
-==== Publications ====+=== Publications ===
  
-Attwood, T.K., Gisel, A., Eriksson, N-E. & Bongcam-Rudloff, E. (2011) Concepts, historical milestones and the central place of bioinformatics in modern biology: a European perspective. Intech Online Publishers, ISBN 978-953-307-282-1.+Attwood, T.K., Gisel, A., Eriksson, N-E. & Bongcam-Rudloff, E. (2011) Concepts, historical milestones and the central place of bioinformatics in modern biology: a European perspective. //Intech Online Publishers//, ISBN 978-953-307-282-1.
  
-Schneider, M.V., Walter, P., Blatter, M.C., Watson, J., Brazas, M.D., Rother, K., Budd, A., Via, A., van Gelder, C.W.G., Jacob, J., Fernandes, P., Nyronen, T., De Las Rivas, J., Blicher, T., Loveland, J., McDowall, J., Jones, P., Vaughan, B., Lopez, R., Attwood, T.K. & Brooksbank, C. (2011) Bioinformatics Training Network (BTN): A community resource for bioinformatics trainers. Briefings in Bioinformatics, PMID: 22110242.+Schneider, M.V., Walter, P., Blatter, M.C., Watson, J., Brazas, M.D., Rother, K., Budd, A., Via, A., van Gelder, C.W.G., Jacob, J., Fernandes, P., Nyronen, T., De Las Rivas, J., Blicher, T., Loveland, J., McDowall, J., Jones, P., Vaughan, B., Lopez, R., Attwood, T.K. & Brooksbank, C. (2011) Bioinformatics Training Network (BTN): A community resource for bioinformatics trainers. //Briefings in Bioinformatics//, PMID: 22110242.
  
-Vroling, B., Thorne, D., McDermott, P., Attwood, T.K. & Pettifer, S.R. (2011) Integrating GPCR-specific information with full text articles. BMC Bioinformatics, 12(1), 362.+Vroling, B., Thorne, D., McDermott, P., Attwood, T.K. & Pettifer, S.R. (2011) Integrating GPCR-specific information with full text articles. //BMC Bioinformatics//, **12(1)**, 362.
  
-Attwood, T.K., Kell, D.B., McDermott, P., Marsh, J., Pettifer, S.R. & Thorne, D. (2010) Utopia Documents: linking scholarly literature with research data. Bioinformatics, 26, i568-i574.+Attwood, T.K., Kell, D.B., McDermott, P., Marsh, J., Pettifer, S.R. & Thorne, D. (2010) Utopia Documents: linking scholarly literature with research data. //Bioinformatics//, **26**, i568-i574.
  
-Attwood, T.K., Kell, D.B., McDermott, P., Marsh, J., Pettifer, S.R. & Thorne, D. (2009) Calling International Rescue - knowledge lost in literature and data landslide! Biochemical Journal, 424(3), 317-333.+Attwood, T.K., Kell, D.B., McDermott, P., Marsh, J., Pettifer, S.R. & Thorne, D. (2009) Calling International Rescue - knowledge lost in literature and data landslide! //Biochemical Journal//, **424(3)**, 317-333.
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