If you are interested in participating this Coordination Action please contact us!
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| public:valid-ulb [2014/05/18 09:47] – [Analyzing thousands of bacterial genomes: gene annotation, metabolism, regulation] andreas | public:valid-ulb [2019/02/12 09:04] (current) – external edit 127.0.0.1 | ||
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| ==ALLBIO training workshop – Marseille, June 23-25, 2014== | ==ALLBIO training workshop – Marseille, June 23-25, 2014== | ||
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| ==Practical info== | ==Practical info== | ||
| - | * Dates June 23-25, 2014 | + | | Date |June 23-25, 2014 |
| + | | Location | ||
| + | | Organizer | ||
| + | | Participants |~20 | ::: | | ||
| + | | Cost|0€ | ||
| + | | Registration |<color red>We apologize but due to a high request we reached the max number of participants before the deadline | ||
| + | \\ | ||
| + | **THE REGISTRATION IS CLOSED**</ | ||
| - | * Place Marseille, | ||
| - | * Site Aix-Marseille Université (AMU) | ||
| - | |||
| - | * Organizer Jacques van Helden (Jacques.van-Helden@univ-amu.fr) | ||
| - | |||
| - | * Expected participants ~ 20 (no more than 25) | ||
| - | |||
| - | * Registration cost 0€ | ||
| ==Funding== | ==Funding== | ||
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| The course does not require any computing skills. A basic knowledge of the Linux environment is welcome, but not required. | The course does not require any computing skills. A basic knowledge of the Linux environment is welcome, but not required. | ||
| - | ==Computer environment== | + | ==Contents== |
| - | The training room is equipped with Linux computers, but participants are welcome to bring their own laptop if they wish to work in their familiar environment. | ||
| - | ==Contents== | + | This training course will include |
| + | - Short talks illustrating the functionalities offered by bioinformatics resources suited for the analysis of multiple bacterial genomes. | ||
| + | - Practicals based on concrete study cases: | ||
| + | * collecting multiple genomes from bacteria; | ||
| + | * comparing annotations between different species; | ||
| + | * extracting metabolic information for selected genomes; | ||
| + | * metabolic projection: coverage of reference pathways by the enzymes found in a genome; | ||
| + | * phylogenetic profiling: detecting genes co-occurrences across genomes; | ||
| + | * phylogenetic footprints: detection of conserved cis-regulatory elements. | ||
| + | - Practicals on programmatic use of the tools: | ||
| + | * extracting data for multiple genomes; | ||
| + | * combining data from diverse sources. | ||
| + | |||
| + | ==Computer environment== | ||
| - | * This training course | + | If possible, participants are invited to bring their own laptop if they wish to work in their familiar environment. We will rent additional computers |
| - | * Short talks illustrating the functionalities offered by bioinformatics resources suited | + | |
| - | * Practicals based on concrete study cases; | + | |
| - | * multiple genomes from bacteria; | + | |
| - | * compare annotations between different species; | + | |
| - | * extract metabolic information for selected genomes; | + | |
| - | * compare lists of annotated enzymes with annotated pathways; | + | |
| - | * build and analyze phylogenetic profiles; | + | |
| - | * detect putative cis-regulatory elements. | + | |
| - | * Practicals on programmatic use of the tools: | + | |
| - | * extracting data for multiple genomes; | + | |
| - | * combining data from diverse sources. | + | |
| ==Schedule== | ==Schedule== | ||