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public:valid-ulb [2014/05/18 16:07] – [Analyzing thousands of bacterial genomes: gene annotation, metabolism, regulation] jvanheldpublic:valid-ulb [2019/02/12 09:04] (current) – external edit 127.0.0.1
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 ==Practical info== ==Practical info==
  
-  * Date: June 23-25, 2014+Date      |June 23-25, 2014  |{{:public:sugiton_1538x1024.jpg?350 |}} | 
 +| Location  |[[http://www.novotel.com/gb/hotel-0911-novotel-marseille-vieux-port/|Hotel Novotel Marseille Vieux Port]]   | ::: | 
 +| Organizer   |<Jacques.van-Helden@univ-amu.fr> | ::: | 
 +| Participants |~20  | ::: | 
 +| Cost|0€   | ::: | 
 +| Registration |<color red>We apologize but due to a high request we reached the max number of participants before the deadline  
 +\\ 
 +**THE REGISTRATION IS CLOSED**</color>| ::: |
  
-  * Location: Marseille, France 
  
-  * Site: Aix-Marseille Université (AMU) 
- 
-  * Organizer: Jacques van Helden (Jacques.van-Helden@univ-amu.fr) 
- 
-  * Expected participants: ~ 20 (no more than 25) 
- 
-  * Registration cost: 0€ 
- 
-  * Registration deadline: June 11 
- 
-  * Registration form: {{:public:bioinfo:allbio_training_ws_marseille_2014-06_registration.doc|}} 
  
 ==Funding== ==Funding==
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 The course does not require any computing skills. A basic knowledge of the Linux environment is welcome, but not required. The course does not require any computing skills. A basic knowledge of the Linux environment is welcome, but not required.
  
-==Computer environment==+==Contents==
  
-The training room is equipped with Linux computers, but participants are welcome to bring their own laptop if they wish to work in their familiar environment.  
- 
-==Contents== 
  
 This training course will include This training course will include
   - Short talks illustrating the functionalities offered by bioinformatics resources suited for the analysis of multiple bacterial genomes.    - Short talks illustrating the functionalities offered by bioinformatics resources suited for the analysis of multiple bacterial genomes. 
   -  Practicals based on concrete study cases:   -  Practicals based on concrete study cases:
-     * multiple genomes from bacteria; +    collecting multiple genomes from bacteria; 
-     compare annotations between different species; +    comparing annotations between different species; 
-     extract metabolic information for selected genomes; +    extracting metabolic information for selected genomes; 
-     compare lists of annotated enzymes with annotated pathways; +    metabolic projection: coverage of reference pathways by the enzymes found in a genome
-     build and analyze phylogenetic profiles+    * phylogenetic profiling: detecting genes co-occurrences across genomes
-     detect putative cis-regulatory elements.+    phylogenetic footprints: detection of conserved cis-regulatory elements.
   - Practicals on programmatic use of the tools:   - Practicals on programmatic use of the tools:
      * extracting data for multiple genomes;      * extracting data for multiple genomes;
      * combining data from diverse sources.      * combining data from diverse sources.
 +
 +==Computer environment==
 +
 +If possible, participants are invited to bring their own laptop if they wish to work in their familiar environment. We will rent additional computers for participants who do not dispose of a laptop. 
  
 ==Schedule== ==Schedule==
public/valid-ulb.1400429253.txt.gz · Last modified: 2019/02/12 09:04 (external edit)
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