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If you are interested in participating this Coordination Action please contact us!

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public:valid-ulb [2014/05/19 04:23] – [Analyzing thousands of bacterial genomes: gene annotation, metabolism, regulation] jvanheldpublic:valid-ulb [2019/02/12 09:04] (current) – external edit 127.0.0.1
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 | Date      |June 23-25, 2014  |{{:public:sugiton_1538x1024.jpg?350 |}} | | Date      |June 23-25, 2014  |{{:public:sugiton_1538x1024.jpg?350 |}} |
-| Location  |Marseille, France   | ::: | +| Location  |[[http://www.novotel.com/gb/hotel-0911-novotel-marseille-vieux-port/|Hotel Novotel Marseille Vieux Port]]   | ::: | 
-| Site      |Aix-Marseille Université (AMU)   | ::: | +| Organizer   |<Jacques.van-Helden@univ-amu.fr> | ::: | 
-| Organizer |Jacques van Helden | ::: | +| Participants |~20  | ::: | 
-| Contact   |<Jacques.van-Helden@univ-amu.fr> | ::: | +| Cost|0€   | ::: | 
-| Expected participants |~ 20  | ::: | +| Registration |<color red>We apologize but due to a high request we reached the max number of participants before the deadline  
-| Registration cost|0€   | ::: | +\\ 
-| Registration deadline |June 11 | ::: | +**THE REGISTRATION IS CLOSED**</color>| ::: | 
-| Registration form|{{:public:bioinfo:allbio_training_ws_marseille_2014-06_registration.doc|}}  ||+
  
  
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 The course does not require any computing skills. A basic knowledge of the Linux environment is welcome, but not required. The course does not require any computing skills. A basic knowledge of the Linux environment is welcome, but not required.
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-==Computer environment== 
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-The training room is equipped with Linux computers, but participants are welcome to bring their own laptop if they wish to work in their familiar environment.  
  
 ==Contents== ==Contents==
 +
  
 This training course will include This training course will include
   - Short talks illustrating the functionalities offered by bioinformatics resources suited for the analysis of multiple bacterial genomes.    - Short talks illustrating the functionalities offered by bioinformatics resources suited for the analysis of multiple bacterial genomes. 
   -  Practicals based on concrete study cases:   -  Practicals based on concrete study cases:
-     * multiple genomes from bacteria; +    * collecting multiple genomes from bacteria; 
-     * compare annotations between different species; +    * comparing annotations between different species; 
-     * extract metabolic information for selected genomes; +    * extracting metabolic information for selected genomes; 
-     * compare lists of annotated enzymes with annotated pathways; +    * metabolic projection: coverage of reference pathways by the enzymes found in a genome; 
-     * build and analyze phylogenetic profiles; +    * phylogenetic profiling: detecting genes co-occurrences across genomes; 
-     * detect putative cis-regulatory elements.+    * phylogenetic footprints: detection of conserved cis-regulatory elements.
   - Practicals on programmatic use of the tools:   - Practicals on programmatic use of the tools:
      * extracting data for multiple genomes;      * extracting data for multiple genomes;
      * combining data from diverse sources.      * combining data from diverse sources.
 +
 +==Computer environment==
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 +If possible, participants are invited to bring their own laptop if they wish to work in their familiar environment. We will rent additional computers for participants who do not dispose of a laptop. 
  
 ==Schedule== ==Schedule==
public/valid-ulb.1400473438.txt.gz · Last modified: 2019/02/12 09:04 (external edit)
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