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AllBio Ontology Workshop:

“Using Biomedical Ontologies for Improved Bioinformatics Databases Interoperability”

October 3-5
Garching, (Munich) Germany

The Workshop will take place at the Institute for Advanced Studies (IAS) across he street form the TUM's Garching Campus

This workshop is planned for biologists and bioinformaticians who are interested in the use of ontologies and web services for their data analysis pipelines.

<color red> Deadline for Registration 13 August 2012 - SPACE IS LIMITED</color>

Programme

Day 1

  • 12:00 - 12:45 Assembly
  • 12:45 - 13:00 Welcome note/administrative
  • 13:00 - 14:00 Welcome talk (Burkhard Rost)
  • 14:00 - 14:45 Web services in the life sciences - best practices
  • 14:45 - 15:30 RESTful services over JSON/BioSchema for JSON
  • 15:30 - 15:45 Coffee break
  • 15:45 - 17:00 Survey of web services technologies.

Day 2

  • 09:00 - 09:15 Assembly
  • 09:15 - 10:30 BioXSD tutorial part I
  • 10:30 - 10:45 Coffee break
  • 10:45 - 12:00 BioXSD tutorial part ii (hands on workshop)
  • 12:00 - 13:30 Lunch
  • 13:30 - 14:15 Web services demo
  • 14:15 - 15:30 EDAM tutorial
  • 15:30 - 15:45 Coffee break
  • 15:35 - 17:00 EDAM hands on workshop

Day 3

  • 09:00 - 09:15  Assembly
  • 09:15 - 10:00  Web services demo
  • 10:00 - 11:00  Data visualization on the web using jQuery  
  • 11:00 - 12:00  Closing remarks

Hotel

There are reserved 23 single rooms (teachers incl.) at hotel Hoyacker Hof from 03.10. to 05.10.2012. The Hotel is in Garching town's center a few minutes walk from the U-bahn stop (1 subway stop away from the IAS).

Organization Committee

Guy Yachdav
Burkhard Rost
Gert Vriend
Steve Pettifer
Erik Bongcam-Rudloff

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