If you are interested in participating this Coordination Action please contact us!

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-=====ALLBIO Workshop===== +{{ public:header4.jpg?nolink&650 |}} 
-===on Bioinformatics Community Building in Uppsala===+ 
 +=====ALLBIO Workshop on "Bioinformatics Community Building" in Uppsala===== 
 +{{:public:dsc_1944_red.jpg?300|}} 
 + 
 +The AllBio community building workshop in Uppsala, Sweden was a successful and stimulating event. 
 + 
 +SLU and SLU Global Bioinformatics Centre recently hosted the "AllBio Community Building Event" at Ultuna, Uppsala, Sweden. 
 + 
 +30 participants attended the event, and 8 selected presentations were held by representatives of the animal, plant, and microbial research fields. The focus of the talks was on difficulties in *omics data analysis, and group discussions led to several test cases being collected for the development of bioinformatics tools in future efforts led by AllBio. 
 + 
 +Below find the programme of the workshop: 
 + 
 +10:00 Introduction to ALLBIO  - Erik Bongcam-Rudloff 
 + 
 +10:30 Coffee 
 + 
 +10:45 Presentations: 
 + * Ola Spjuth - UPPMAX 
 + * Hans Ronne - Algal genome sequencing 
 + * Robert Söderlund - Whole genome based SNP-typing of bacteria 
 + * Ashfaq Ali - RNA-seq and proteomics in potato 
 +  
 +12:00 Lunch 
 + 
 +13:30 Presentations: 
 + * Jacob Höglund, Biao Wang - Bioinformatics for a non model organism 
 + * Erik Alexandersson - Annotation of potatogenome 
 + * Eva Hellmén - Canine tumour analysis 
 + * Magnus Alm Rosenblad - De novo-sequencing of marine organisms 
 +  
 +14:30 Coffee 
 + 
 +14:45 Group discussions aiming to identifying new test cases and important conferences/workshops i animal, plant and microbial research fields. 
 + 
 +15:30 Discussion with short presentations from the group discussions 
 + 
 +16:00 Closing of the event 
 + // 
 + // 
 + // 
 + // 
 + 
 + 
 +  
 +=== Call for the AllBio Community building event in Sweden === 
 + 
 +AllBio is a concerted effort of 10 bioinformatics academic institutes and interfaces 
 +between the agricultural sciences, microbiology, and bioinformatics. The goal of the 
 +project is to identify and develop bioinformatics tools and databases to solve problems 
 +for the scientific communities. 
 + 
 +**We would hereby like to invite you to attend the AllBio community building event in 
 +Uppsala, which will take place on May 3 in Uppsala, Sweden.** ({{:public:allbio-invitation_sweden.pdf|}}). 
 + 
 +There are myriads of bioinformatics tools within each discipline that have been developed 
 +by members in the respective areas, and although the tools within the !elds are known to 
 +experts in the speci!c communities, there is a wealth of knowledge in the full 
 +biological/bioinformatics spectrum that could be highly beneficial to other research areas. 
 + 
 +As part of the bioinformatics community we would like to work on detecting gaps in 
 +existing tools to handle biological data. We will identify your needs in a form which you 
 +will help to fill out, describing the issue(s) that you want solved, which methods you have 
 +tried before and how you would ideally see the results visualised. The test cases created 
 +during the workshop will be forwarded to the AllBio consortium to define which challenges 
 +should be met by bioinformatics tools from the perspective of the end user. 
 + 
 +AllBio will be able to financially support a limited numbers of participants to this workshop. 
 +To work efficiently during the day we would like to ask you to submit a short 
 +abstract. 
 + 
 +The abstract should be divided into 4 parts: 
 + 
 +  - Biological background of the bioinformatics problem 
 +  - Nature of data to be analysed 
 +  - Nature of bottleneck in the data analysis process 
 +  - Ideal workflow and end result of the analysis process 
 + 
 +The abstract should not exceed one page! 
 + 
 +Abstracts are submitted to **henrik.lysell@slu.se** 
 +**Deadline of abstract submission will be 30 April 2012.** 
 + 
 +Participation in the workshop will be free, including coffee breaks and dinner, and we 
 +invite all abstract providers to participate in this event in Uppsala.  
 +All abstracts will be analysed and forwarded to the AllBio community, shown on the AllBio portal and to be subject for future selection for detailed processing within the AllBio consortium. 
 + 
 +===Preliminary programme:=== 
 +  * Registration and breakfast 
 +  * Selected presentations 
 +  * Lunch 
 +  * Round table discussions of test cases 
 +  * Dinner 
 + 
 +Updates on this event: www.allbioinformatics.eu 
 + 
 +Find the venue (Ultuna, Undervisningshuset, Sal L): 
 +www.slu.se/en/about-slu/locations/uppsala/find-your-way-to-campus-ultuna/ 
 + 
 +Organised by SLU and SciLife lab.  
 + 
 + 
 +{{ public:scilifelab_slu.png?200 }}
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