8th - 10th January 2014

Helsinki, Finland

This workshop consists of two lecture days followed by five hands-on sessions. More information and registration can be found //www.csc.fi/english/csc/courses/archive/rnaseq2014.

Speakers

• Mikael Huss (SciLifelab, Sweden): Quality checking and pre-processing your RNA-seq data
• Pawel Labaj (BOKU, Austria): Reliability and interpretation of RNA-Seq expression profiles
• Pär Engström (SciLifelab, Sweden): Systematic evaluation of spliced aligners for RNA-seq
• Panu Somervuo (University of Helsinki, Finland): Introduction to transcriptome assembly
• Ari Löytynoja (University of Helsinki, Finland): Targeted assembly of RNA-seq data using phylogenetic information
• Manuel Corpas (The Genome Analysis Centre, UK): Annotation of newly sequenced genomes using RNA-seq
• Laura Elo (University of Turku, Finland): Comparison of differential expression analysis tools
• Antti Honkela (HIIT, Finland): BitSeq - transcript isoform expression and differential expression estimation from RNA-seq data
• Garry Wong (UEF, Finland): An introduction to small RNA sequence analysis with applications in nematodes
• Andreas Gisel (ITB, Italy): smallRNA data analysis and miRNA discovery in plants and mammalians
• Angel Rubio / Ander Muniategui (CEIT, Spain): Joint analysis of miRNA and mRNA expression data